Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-111 406.8 225 100.0
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-50 204.1 206 52.9
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 4.1e-37 159.1 233 39.9
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 6.5e-35 151.8 259 37.1
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 8.4e-35 151.4 223 40.4
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.2e-34 149.4 240 37.9
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.1e-33 146.7 228 39.5
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 4.6e-33 145.6 237 36.3
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 8.7e-32 141.4 210 39.0
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.1e-31 141.0 230 39.1
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.5e-31 139.8 233 39.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 9.7e-31 137.9 228 36.8
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.6e-30 137.1 232 37.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 3.7e-30 136.0 221 37.1
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.8e-30 135.6 242 36.8
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.1e-29 132.9 194 41.8
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.9e-28 128.6 130 47.7
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 7.7e-28 128.3 230 35.7
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-27 127.9 248 36.7
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.0e-27 127.9 249 37.3
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.5e-26 123.2 126 49.2
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 5.5e-26 122.1 234 32.9
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.2e-25 120.9 121 52.9
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.8e-24 117.1 237 35.0
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.5e-23 113.2 239 33.1
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.3e-22 110.9 245 32.2
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.5e-20 104.0 113 46.9
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.5e-20 104.0 197 31.0
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.3e-19 100.9 208 37.5
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.7e-19 100.5 221 35.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-19 99.0 213 32.4
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 2.5e-18 96.7 101 50.5
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 5.5e-18 95.5 205 35.1
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 7.2e-18 95.1 242 29.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 9.4e-18 94.7 234 33.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.7e-17 93.2 237 32.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-17 92.8 227 30.8
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 3.6e-17 92.8 237 32.1
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.6e-17 92.8 229 30.6
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 7.9e-17 91.7 229 31.0
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.4e-16 90.9 206 31.6
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.7e-16 88.6 244 28.7
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.1e-15 87.8 223 29.1
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-15 87.8 238 29.0
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 3.3e-15 86.3 200 29.0
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 5.7e-15 85.5 259 27.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.3e-14 84.3 145 38.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-14 84.0 242 28.9
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.2e-14 83.6 228 27.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 6.3e-14 82.0 222 27.5
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 8.2e-14 81.6 240 29.6
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.1e-13 79.7 135 34.8
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.1e-13 79.3 241 25.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 4.1e-13 79.3 203 29.6
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 5.3e-13 79.0 254 28.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 7.0e-13 78.6 215 28.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.2e-12 77.8 247 27.5
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.5e-12 76.3 163 33.7
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-11 74.7 149 33.6
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.5e-11 72.0 247 25.5
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.5e-10 70.1 225 26.7
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.2e-10 69.3 223 27.8
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 7.2e-10 68.6 244 23.4
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 7.2e-10 68.6 123 33.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 7.2e-10 68.6 140 32.1
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 7.2e-10 68.6 206 31.1
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.6e-09 67.4 121 30.6
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.7e-09 66.6 197 29.4
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.6e-09 66.2 179 26.8
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 3.6e-09 66.2 177 29.9
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 3.6e-09 66.2 118 31.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 4.7e-09 65.9 197 28.9
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 4.7e-09 65.9 125 33.6
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 6.1e-09 65.5 197 28.9
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 8.0e-09 65.1 236 25.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 8.0e-09 65.1 197 28.4
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 8.0e-09 65.1 124 34.7
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-08 64.7 180 28.3
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.0e-08 64.7 121 33.1
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.4e-08 64.3 243 26.3
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.3e-08 63.5 256 25.8
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.3e-08 63.5 115 34.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.0e-08 63.2 125 32.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.0e-08 62.8 111 36.0
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.0e-08 62.8 178 26.4
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.0e-08 62.8 214 26.6
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 6.7e-08 62.0 149 32.2
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.7e-08 62.0 124 33.9
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.7e-08 62.0 118 32.2
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.1e-07 61.2 201 27.4
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.1e-07 61.2 178 24.7
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.1e-07 61.2 215 25.1
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.0e-07 60.5 200 27.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-07 60.5 115 33.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.6e-07 60.1 115 31.3
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.4e-07 59.3 123 33.3
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 4.4e-07 59.3 243 24.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 4.4e-07 59.3 213 25.8
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 5.7e-07 58.9 115 30.4
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 5.7e-07 58.9 115 31.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.7e-07 58.9 125 28.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.7e-07 58.9 173 27.7
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 7.5e-07 58.5 123 29.3
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.5e-07 58.5 127 30.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.5e-07 58.5 291 24.1
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 7.5e-07 58.5 255 25.1
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 9.7e-07 58.2 59 54.2
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 9.7e-07 58.2 115 30.4
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 9.7e-07 58.2 115 28.7
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.3e-06 57.8 256 25.4
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.3e-06 57.8 123 32.5
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.3e-06 57.8 123 33.3
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.2e-06 57.0 121 32.2
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 2.2e-06 57.0 120 28.3
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.2e-06 57.0 180 25.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.7e-06 56.2 119 31.1
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 3.7e-06 56.2 120 30.0
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.7e-06 56.2 44 52.3
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 3.7e-06 56.2 152 27.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.7e-06 56.2 120 30.0
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.7e-06 56.2 115 31.3
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.8e-06 55.8 123 32.5
CAN.G1733.3 Capsicum annuum HOM05D004190 ORTHO05D004692 4.8e-06 55.8 74 36.5
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.8e-06 55.8 123 33.3
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 6.3e-06 55.5 115 33.0
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 6.3e-06 55.5 49 49.0
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 8.2e-06 55.1 123 28.5
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 8.2e-06 55.1 203 25.1


User provided reference genes

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