Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 6.3e-82 307.4 155 100.0
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.4e-49 199.9 149 68.5
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 9.2e-49 197.2 151 67.5
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.1e-48 196.1 151 67.5
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.6e-48 194.9 147 68.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.6e-48 194.9 147 68.7
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.6e-48 194.9 150 68.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 6.0e-48 194.5 151 66.2
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.1e-47 191.4 150 66.0
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 6.6e-47 191.0 148 66.2
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-46 189.9 146 69.2
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.3e-46 188.3 151 65.6
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 4.3e-46 188.3 145 65.5
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 5.6e-46 188.0 151 64.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.6e-46 188.0 151 64.2
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 5.6e-46 188.0 152 65.8
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 7.3e-46 187.6 146 64.4
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 9.6e-46 187.2 150 62.0
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.6e-45 185.3 151 65.6
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 3.6e-45 185.3 151 60.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.2e-45 184.5 151 64.9
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 6.2e-45 184.5 141 66.7
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 8.1e-45 184.1 146 63.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.1e-44 183.7 151 64.9
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-44 183.7 146 63.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.4e-44 183.3 151 63.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.4e-44 183.3 151 64.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.8e-44 183.0 146 62.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.4e-44 182.6 149 63.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 4.0e-44 181.8 152 63.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 5.3e-44 181.4 149 61.7
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 5.3e-44 181.4 153 62.1
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 6.9e-44 181.0 151 64.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.2e-43 180.3 152 62.5
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-43 179.5 144 64.6
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 4.4e-43 178.3 151 62.3
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.4e-43 178.3 147 63.9
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 5.8e-43 177.9 151 61.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.8e-43 177.9 144 63.2
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 7.6e-43 177.6 150 59.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.9e-43 177.2 147 63.3
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.9e-43 177.2 151 61.6
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 9.9e-43 177.2 148 59.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.3e-42 176.8 149 59.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.7e-42 176.4 144 63.9
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 2.2e-42 176.0 150 58.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.8e-42 175.3 149 61.1
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.9e-42 174.9 148 63.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 8.4e-42 174.1 151 60.3
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.4e-41 173.3 153 60.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.4e-41 173.3 141 62.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.9e-41 172.9 153 60.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.4e-41 172.6 141 61.7
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.2e-41 171.8 141 63.8
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.4e-41 171.4 150 61.3
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.1e-41 171.0 141 63.8
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 7.1e-41 171.0 151 58.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 9.3e-41 170.6 153 60.1
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.3e-41 170.6 153 60.1
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.2e-40 170.2 141 63.1
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.2e-40 170.2 141 60.3
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-40 169.9 153 58.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-40 169.5 146 59.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.7e-40 169.1 143 60.1
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.5e-40 168.7 146 55.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.5e-40 168.7 153 56.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.5e-40 168.7 150 60.0
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 6.0e-40 167.9 148 61.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.0e-40 167.9 149 58.4
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.8e-40 167.5 149 59.7
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 7.8e-40 167.5 153 56.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 7.8e-40 167.5 158 57.6
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.0e-39 167.2 148 56.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.3e-39 166.8 151 57.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.3e-39 166.8 150 58.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.0e-39 165.6 148 56.8
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.9e-39 165.2 146 54.1
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 3.9e-39 165.2 148 58.8
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.1e-39 164.9 141 58.9
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.6e-39 164.5 141 58.2
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.1e-38 163.7 148 54.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.1e-38 163.7 142 62.0
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.1e-38 163.7 118 70.3
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.1e-38 163.7 144 58.3
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-38 163.3 146 54.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.5e-38 162.5 146 56.2
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-38 162.5 146 56.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.5e-38 162.5 146 54.1
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.3e-38 162.2 146 54.1
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.3e-38 162.2 147 59.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.3e-38 162.2 141 57.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.3e-38 162.2 144 58.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.6e-38 161.4 150 58.0
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 9.6e-38 160.6 146 54.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.6e-37 159.8 148 53.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.6e-37 159.8 141 58.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.1e-37 159.5 148 57.4
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 8.1e-37 157.5 148 55.4
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.1e-36 157.1 146 53.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.8e-36 156.4 145 57.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.4e-36 156.0 146 52.1
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.4e-36 156.0 146 51.4
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.4e-36 156.0 146 58.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 5.3e-36 154.8 143 57.3
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 6.9e-36 154.5 145 56.6
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 7.6e-35 151.0 147 56.5
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 9.9e-35 150.6 127 63.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.1e-33 147.1 143 54.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.4e-33 144.8 153 52.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 9.3e-33 144.1 152 50.0
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.1e-32 142.9 152 53.3
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-32 142.9 146 54.1
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.7e-32 142.5 103 68.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 3.5e-32 142.1 146 49.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 7.9e-32 141.0 146 50.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 7.9e-32 141.0 161 46.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.0e-31 140.6 142 52.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.0e-31 140.6 111 61.3
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.0e-31 140.6 141 51.8
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 6.7e-31 137.9 142 50.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-30 137.1 132 51.5
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.3e-30 135.2 140 50.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 2.8e-29 132.5 146 49.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.8e-29 132.5 147 52.4
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.8e-29 131.7 149 48.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 8.1e-29 131.0 97 64.9
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.1e-28 129.0 139 51.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 9.0e-28 127.5 132 50.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.1e-22 110.5 142 43.7
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.5e-22 110.2 63 76.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.7e-21 105.5 143 43.4
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 9.0e-20 100.9 131 47.3
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.5e-18 94.7 152 39.5
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 3.0e-15 85.9 145 39.3
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.9e-14 83.2 97 46.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.9e-14 83.2 97 46.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 7.4e-14 81.3 86 50.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.1e-12 75.5 53 60.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.6e-11 72.8 144 31.9
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 8.5e-10 67.8 114 31.6
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.4e-09 67.0 115 40.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-09 66.6 58 63.8
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 4.6e-08 62.0 57 54.4
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 6.1e-08 61.6 56 55.4
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.1e-06 57.4 115 37.4


User provided reference genes

Program Settings