Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 1.0e-102 376.7 183 100.0
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 3.4e-90 335.1 183 88.5
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 3.7e-89 331.6 182 89.0
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.1e-88 330.1 183 88.0
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.8e-88 329.3 183 88.5
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 5.9e-87 324.3 183 85.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 6.5e-86 320.9 183 86.3
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 6.5e-86 320.9 183 85.2
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.1e-85 320.1 183 85.2
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.1e-85 320.1 183 86.3
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.1e-85 320.1 183 86.3
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 3.3e-85 318.5 183 85.2
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.6e-84 316.2 183 83.1
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 2.8e-84 315.5 183 85.2
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 1.8e-83 312.8 183 84.2
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 2.3e-83 312.4 183 82.5
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.5e-82 309.7 183 85.2
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 7.5e-82 307.4 181 80.7
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 3.7e-81 305.1 183 83.6
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.1e-80 303.5 183 83.1
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 1.1e-80 303.5 183 83.1
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.1e-80 303.5 183 83.1
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.4e-80 303.1 183 81.4
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 2.4e-80 302.4 182 83.0
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 3.1e-80 302.0 183 83.6
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 3.1e-80 302.0 183 80.9
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 7.0e-80 300.8 183 82.5
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 9.2e-80 300.4 182 80.8
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.2e-80 300.4 183 80.9
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.6e-79 299.7 183 82.0
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 5.9e-79 297.7 182 80.2
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 5.9e-79 297.7 183 81.4
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 7.8e-79 297.4 183 80.3
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-78 297.0 183 78.1
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 1.0e-78 297.0 182 80.2
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.7e-78 296.2 183 79.8
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.7e-78 296.2 183 81.4
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 2.3e-78 295.8 183 80.9
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.3e-78 295.8 183 77.6
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 2.3e-78 295.8 183 81.4
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 2.9e-78 295.4 183 80.3
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 2.9e-78 295.4 183 80.9
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 3.8e-78 295.0 183 80.9
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 5.0e-78 294.7 183 76.5
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 5.0e-78 294.7 183 80.9
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 5.0e-78 294.7 183 80.3
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 5.0e-78 294.7 183 79.8
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 6.6e-78 294.3 183 79.8
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 8.6e-78 293.9 183 80.9
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 8.6e-78 293.9 183 79.8
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.1e-77 293.5 183 80.3
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.1e-77 293.5 183 80.9
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.5e-77 293.1 182 79.7
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 1.5e-77 293.1 183 79.8
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 1.5e-77 293.1 183 80.3
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.9e-77 292.7 183 80.9
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.9e-77 292.7 183 80.9
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 1.9e-77 292.7 183 79.8
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 2.5e-77 292.4 183 80.3
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 2.5e-77 292.4 183 80.3
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 3.3e-77 292.0 182 80.2
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 3.3e-77 292.0 177 82.5
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 7.3e-77 290.8 174 83.3
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 9.5e-77 290.4 183 79.2
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 1.6e-76 289.7 183 78.7
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.6e-76 289.7 182 79.7
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 2.8e-76 288.9 183 79.2
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 2.8e-76 288.9 183 79.2
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 4.7e-76 288.1 183 78.7
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 4.7e-76 288.1 183 78.7
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 4.7e-76 288.1 183 78.7
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 4.7e-76 288.1 182 79.7
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 6.1e-76 287.7 183 78.7
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 8.0e-76 287.3 183 79.2
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.0e-75 287.0 183 76.0
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 2.3e-75 285.8 183 76.0
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.3e-75 285.8 183 78.1
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.3e-75 285.8 183 78.1
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 8.9e-75 283.9 183 77.6
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.9e-75 283.9 183 78.1
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-74 283.5 183 78.1
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 3.4e-74 282.0 182 76.9
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 5.8e-74 281.2 184 77.7
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.8e-74 281.2 183 74.3
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 9.8e-74 280.4 182 76.4
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 9.8e-74 280.4 183 76.5
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.7e-73 278.5 183 74.3
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.7e-73 278.5 183 74.3
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 6.4e-73 277.7 183 77.0
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 8.3e-73 277.3 182 76.4
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 8.3e-73 277.3 182 76.4
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 1.1e-72 276.9 183 77.0
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 1.8e-72 276.2 183 76.0
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 1.8e-72 276.2 182 75.3
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 2.0e-71 272.7 182 74.2
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.0e-71 272.7 182 74.2
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 2.7e-71 272.3 182 75.8
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 7.8e-71 270.8 182 74.2
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 1.0e-70 270.4 182 73.6
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.3e-70 270.0 142 88.0
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 1.7e-70 269.6 183 72.7
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.3e-70 269.2 185 74.6
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 5.0e-70 268.1 182 70.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 5.0e-70 268.1 182 70.9
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-69 266.5 185 73.5
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 2.5e-69 265.8 182 70.3
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 2.5e-69 265.8 183 71.6
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 2.5e-69 265.8 182 71.4
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 4.3e-69 265.0 185 73.0
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 5.6e-69 264.6 166 78.9
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.5e-69 263.8 185 73.5
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 1.1e-67 260.4 182 70.3
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.2e-65 252.7 129 89.9
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 2.4e-64 249.2 183 72.1
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 3.5e-63 245.4 184 65.8
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 4.6e-63 245.0 164 76.2
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 8.6e-62 240.7 141 85.1
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.3e-61 238.8 157 74.5
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 1.4e-59 233.4 137 76.6
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.4e-58 228.4 185 62.2
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.7e-57 226.5 183 59.0
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 7.1e-56 221.1 186 57.5
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 7.1e-56 221.1 183 61.7
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.7e-55 219.2 132 81.1
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 2.8e-52 209.1 134 79.1
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 1.2e-47 193.7 182 57.1
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 1.1e-45 187.2 142 68.3
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 1.1e-43 180.6 183 51.9
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.4e-43 179.5 127 63.0
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 3.1e-43 179.1 182 46.7
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 2.6e-42 176.0 189 48.1
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.8e-42 174.9 167 52.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.3e-38 163.7 191 47.6
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-29 133.7 184 49.5
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 1.9e-29 133.3 182 50.0
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-29 133.3 182 50.0
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.6e-29 131.7 184 48.9
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 7.4e-29 131.3 116 55.2
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.1e-27 125.9 82 79.3
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 1.1e-24 117.5 138 47.1
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 1.9e-24 116.7 139 48.2
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 2.4e-24 116.3 139 46.8
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 2.4e-24 116.3 139 46.8
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 9.3e-24 114.4 134 46.3
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 6.2e-20 101.7 139 44.6
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 4.9e-17 92.0 75 64.0
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 8.7e-14 81.3 133 42.9
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 4.3e-13 79.0 49 75.5
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 7.4e-13 78.2 52 75.0
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-12 77.0 119 44.5
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 6.7e-06 55.1 40 77.5


User provided reference genes

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