Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G033000 Cucumis sativus L. HOM05D007289 ORTHO05D009215 6.0e-211 737.3 373 100.0
MELO3C023367.2 Cucumis melo HOM05D007289 ORTHO05D009215 5.4e-196 687.6 373 93.6
Sed0021795 Sechium edule HOM05D007289 ORTHO05D009215 1.5e-169 599.7 374 82.9
Prupe.3G073900 Prunus persica HOM05D007289 ORTHO05D009215 4.4e-113 412.1 380 57.9
MD17G1197800 Malus domestica HOM05D007289 ORTHO05D009215 6.0e-110 401.7 393 56.5
TAR383G0594 Trochodendron aralioides HOM05D007289 ORTHO05D009215 1.5e-108 397.1 398 56.5
CSS0039074 Camellia sinensis var. sinensis HOM05D007289 ORTHO05D009215 1.2e-107 394.0 396 57.1
Dinv30529 Davidia involucrata HOM05D007289 ORTHO05D009215 1.2e-105 387.5 404 55.4
Ciclev10025766m.g Citrus clementina HOM05D007289 ORTHO05D009215 9.8e-105 384.4 379 56.7
CiPaw.02G152300 Carya illinoinensis HOM05D007289 ORTHO05D009215 2.4e-103 379.8 344 58.7
Cfa002049 Carpinus fangiana HOM05D007289 ORTHO05D009215 5.4e-103 378.6 375 56.0
RcHm_v2.0_Chr2g0137421 Rosa chinensis HOM05D007289 ORTHO05D009215 7.0e-103 378.3 388 55.7
QL05p025382 Quercus lobata HOM05D007289 ORTHO05D009215 2.0e-102 376.7 393 54.2
FvH4_6g30910 Fragaria vesca HOM05D007289 ORTHO05D009215 4.6e-102 375.6 385 56.1
Manes.04G121300 Manihot esculenta HOM05D007289 ORTHO05D009215 4.6e-102 375.6 383 53.3
Lj9C506T12 Lonicera japonica HOM05D007289 ORTHO05D009215 6.0e-102 375.2 396 52.3
VMungo1080G1522 Vigna mungo HOM05D007289 ORTHO05D009215 7.8e-102 374.8 380 55.3
Ca_01106_v3 Cicer arietinum L. HOM05D007289 ORTHO05D009215 1.3e-101 374.0 366 55.5
Glyma.13G360800 Glycine max HOM05D007289 ORTHO05D009215 1.7e-101 373.6 377 55.7
vmacro18934 Vaccinium macrocarpon HOM05D007289 ORTHO05D009215 2.3e-101 373.2 396 55.6
Phvul.005G172600 Phaseolus vulgaris HOM05D007289 ORTHO05D009215 5.0e-101 372.1 372 54.8
FAN02G0535 Fragaria x ananassa HOM05D007289 ORTHO05D009215 1.1e-100 370.9 383 54.8
Psat5g299280 Pisum sativum HOM05D007289 ORTHO05D009215 4.3e-100 369.0 380 55.5
Gohir.A02G122500 Gossypium hirsutum HOM05D007289 ORTHO05D009215 5.6e-100 368.6 378 53.4
Potri.001G178100 Populus trichocarpa HOM05D007289 ORTHO05D009215 7.3e-100 368.2 366 53.6
CANSAT56G1700 Cannabis sativa HOM05D007289 ORTHO05D009215 1.2e-99 367.5 387 53.7
Gorai.002G058300 Gossypium raimondii HOM05D007289 ORTHO05D009215 4.7e-99 365.5 378 53.2
DCAR_016227 Daucus carota HOM05D007289 ORTHO05D009215 8.1e-99 364.8 381 54.3
TPR.G37243 Trifolium pratense HOM05D007289 ORTHO05D009215 3.1e-98 362.8 378 53.2
THA.LOC104808206 Tarenaya hassleriana HOM05D007289 ORTHO05D009215 4.0e-98 362.5 372 56.2
Sabra01G0148500 Salix brachista HOM05D007289 ORTHO05D009215 6.8e-98 361.7 380 52.4
GSVIVG01017153001 Vitis vinifera HOM05D007289 ORTHO05D009215 1.2e-97 360.9 331 60.1
Lj3g0010801 Lotus japonicus HOM05D007289 ORTHO05D009215 1.5e-97 360.5 385 53.8
Medtr2g102430 Medicago truncatula HOM05D007289 ORTHO05D009215 1.5e-97 360.5 378 53.2
Lalb_Chr14g0373531 Lupinus albus HOM05D007289 ORTHO05D009215 3.4e-97 359.4 369 54.2
PSO782G0119 Papaver somniferum HOM05D007289 ORTHO05D009215 4.4e-97 359.0 380 51.6
Rhsim08G0218600 Rhododendron simsii HOM05D007289 ORTHO05D009215 4.4e-97 359.0 397 51.6
Lalb_Chr22g0351171 Lupinus albus HOM05D007289 ORTHO05D009215 5.8e-97 358.6 378 54.2
Sc12g0009160 Simmondsia chinensis HOM05D007289 ORTHO05D009215 2.9e-96 356.3 399 50.4
Cc04_g03590 Coffea canephora HOM05D007289 ORTHO05D009215 4.9e-96 355.5 382 54.2
MBI04_g26647_MAGBIO Magnolia biondii HOM05D007289 ORTHO05D009215 1.1e-95 354.4 378 53.2
Atru.chr1.3224 Acer truncatum HOM05D007289 ORTHO05D009215 4.1e-95 352.4 389 54.0
Hund06601 Selenicereus undatus HOM05D007289 ORTHO05D009215 7.1e-95 351.7 398 50.8
AL2G41080 Arabidopsis lyrata HOM05D007289 ORTHO05D009215 2.7e-94 349.7 371 53.6
COL.COLO4_30328 Corchorus olitorius HOM05D007289 ORTHO05D009215 3.5e-94 349.4 379 51.7
PGR102G0666 Punica granatum HOM05D007289 ORTHO05D009215 2.3e-93 346.7 372 54.0
PGSC0003DMG400016511 Solanum tuberosum HOM05D007289 ORTHO05D009215 3.9e-93 345.9 379 51.5
Nitab4.5_0002327g0060 Nicotiana tabacum HOM05D007289 ORTHO05D009215 6.6e-93 345.1 377 53.1
Sopen06g025060 Solanum pennellii HOM05D007289 ORTHO05D009215 1.5e-92 344.0 379 51.5
Thhalv10018735m.g Eutrema salsugineum HOM05D007289 ORTHO05D009215 3.3e-92 342.8 371 53.1
Solyc06g066780.3 Solanum lycopersicum HOM05D007289 ORTHO05D009215 3.3e-92 342.8 382 51.3
Aa31LG4G690 Aethionema arabicum HOM05D007289 ORTHO05D009215 9.5e-92 341.3 380 52.4
Aqoxy7G01850 Aquilegia oxysepala HOM05D007289 ORTHO05D009215 9.5e-92 341.3 395 49.6
Sp5g35390 Schrenkiella parvula HOM05D007289 ORTHO05D009215 2.1e-91 340.1 365 53.4
TWI75G1369 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 2.1e-91 340.1 377 52.3
arahy.Tifrunner.gnm1.ann1.UJ7D22 Arachis hypogaea HOM05D007289 ORTHO05D009215 2.8e-91 339.7 388 51.5
arahy.Tifrunner.gnm1.ann1.HRS6MU Arachis hypogaea HOM05D007289 ORTHO05D009215 4.7e-91 339.0 388 51.3
CARHR074820 Cardamine hirsuta HOM05D007289 ORTHO05D009215 6.2e-91 338.6 363 52.9
ClCG09G002310 Citrullus lanatus HOM05D007289 ORTHO05D009215 6.8e-90 335.1 175 94.9
Peaxi162Scf00207g00834 Petunia axillaris HOM05D007289 ORTHO05D009215 6.8e-90 335.1 300 57.7
MSTRG.11091 Avicennia marina HOM05D007289 ORTHO05D009215 2.0e-89 333.6 368 50.5
FAN09G0173 Fragaria x ananassa HOM05D007289 ORTHO05D009215 2.0e-89 333.6 353 54.7
AT1G80420 Arabidopsis thaliana HOM05D007289 ORTHO05D009215 4.4e-89 332.4 373 52.3
Oeu033497.1 Olea europaea HOM05D007289 ORTHO05D009215 1.3e-88 330.9 308 58.4
CAN.G395.19 Capsicum annuum HOM05D007289 ORTHO05D009215 1.1e-87 327.8 373 51.2
BolC2t09743H Brassica oleracea HOM05D007289 ORTHO05D009215 1.9e-87 327.0 368 51.9
Thecc.06G082700 Theobroma cacao HOM05D007289 ORTHO05D009215 1.9e-87 327.0 377 50.4
Carub.0002s2715 Capsella rubella HOM05D007289 ORTHO05D009215 2.4e-87 326.6 369 50.9
AUR62016430 Chenopodium quinoa HOM05D007289 ORTHO05D009215 2.4e-87 326.6 395 48.1
Os06g0144000 Oryza sativa ssp. japonica HOM05D007289 ORTHO05D009215 4.1e-87 325.9 365 50.1
HanXRQChr16g0501051 Helianthus annuus HOM05D007289 ORTHO05D009215 9.2e-87 324.7 359 52.9
BcaC03g15968 Brassica carinata HOM05D007289 ORTHO05D009215 1.2e-86 324.3 368 51.6
C02p37330 Brassica napus HOM05D007289 ORTHO05D009215 1.6e-86 323.9 373 50.7
AUR62011614 Chenopodium quinoa HOM05D007289 ORTHO05D009215 2.1e-86 323.6 401 47.6
Lsat_1_v5_gn_4_103480 Lactuca sativa HOM05D007289 ORTHO05D009215 4.6e-86 322.4 376 49.5
Migut.I00845 Erythranthe guttata HOM05D007289 ORTHO05D009215 7.8e-86 321.6 364 49.5
A02p23560 Brassica napus HOM05D007289 ORTHO05D009215 1.7e-85 320.5 370 51.6
BraA02t07349Z Brassica rapa HOM05D007289 ORTHO05D009215 1.7e-85 320.5 370 51.6
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 3.6e-83 312.8 331 55.3
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 6.2e-83 312.0 359 49.0
ECA232G0523 Erigeron canadensis HOM05D007289 ORTHO05D009215 6.9e-82 308.5 370 48.9
Nn8g39279 Nelumbo nucifera HOM05D007289 ORTHO05D009215 6.4e-80 302.0 332 51.8
ClCG09G002320 Citrullus lanatus HOM05D007289 ORTHO05D009215 4.6e-78 295.8 258 65.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 6.0e-78 295.4 384 45.6
EL10Ac9g21988 Beta vulgaris HOM05D007289 ORTHO05D009215 9.6e-76 288.1 471 41.6
PSO339G0085 Papaver somniferum HOM05D007289 ORTHO05D009215 1.6e-75 287.3 273 54.6
Duzib235G0864 Durio zibethinus HOM05D007289 ORTHO05D009215 2.1e-75 287.0 375 46.7
ATR0037G063 Amborella trichopoda HOM05D007289 ORTHO05D009215 4.8e-75 285.8 407 43.0
Haze_16457 Corylus avellana HOM05D007289 ORTHO05D009215 1.3e-72 277.7 573 35.4
SalBow2G1977 Salvia bowleyana HOM05D007289 ORTHO05D009215 1.5e-68 264.2 365 44.4
SEGI_14605 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 1.4e-66 257.7 348 42.0
Cpa.g.sc10.164 Carica papaya HOM05D007289 ORTHO05D009215 2.6e-65 253.4 282 49.3
HPP92_000676 Vanilla planifolia HOM05D007289 ORTHO05D009215 1.3e-61 241.1 270 47.0
Glyma.15G013100 Glycine max HOM05D007289 ORTHO05D009215 5.6e-60 235.7 245 50.6
Pp3c15_20480 Physcomitrium patens HOM05D007289 ORTHO05D009215 1.2e-54 218.0 315 40.0
Gohir.D03G073900 Gossypium hirsutum HOM05D007289 ORTHO05D009215 2.7e-54 216.9 180 60.0
FAN05G4871 Fragaria x ananassa HOM05D007289 ORTHO05D009215 4.2e-47 193.0 155 63.9
Mapoly0044s0047 Marchantia polymorpha HOM05D007289 ORTHO05D009215 9.4e-47 191.8 323 36.5
FAN05G4017 Fragaria x ananassa HOM05D007289 ORTHO05D009215 6.7e-45 185.7 211 52.1
Eucgr.F03006 Eucalyptus grandis HOM05D007289 ORTHO05D009215 1.2e-41 174.9 224 47.3
Nitab4.5_0021849g0010 Nicotiana tabacum HOM05D007289 ORTHO05D009215 6.5e-40 169.1 195 49.2
unitig_21.g20513 Utricularia gibba HOM05D007289 ORTHO05D009215 2.0e-36 157.5 377 34.0
SEGI_13111 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.6e-36 157.1 193 45.1
CBR_g23739 Chara braunii HOM05D007289 ORTHO05D009215 2.6e-33 147.1 98 61.2
TWI12G0812 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 3.4e-33 146.7 159 52.8
Zm00001eb377280 Zea mays HOM05D007289 ORTHO05D009215 8.5e-32 142.1 208 41.8
Lj2P1136T43 Lonicera japonica HOM05D007289 ORTHO05D009215 2.8e-27 127.1 113 55.8
Hma1.2p1_0845F.1_g227540 Hydrangea macrophylla HOM05D007289 ORTHO05D009215 2.0e-25 120.9 68 77.9
Ah.01g011120 Amaranthus hybridus HOM05D007289 ORTHO05D009215 3.1e-18 97.1 141 42.6
Pp3c21_18730 Physcomitrium patens HOM05D007289 ORTHO05D009215 3.5e-09 67.0 136 27.9
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 8.0e-06 55.8 128 29.7


User provided reference genes

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