Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1320.4 674 100.0
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1306.6 674 98.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1252.3 671 94.8
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1183.7 671 88.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1172.1 673 87.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1171.4 665 88.3
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1170.6 674 87.1
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1170.2 665 88.3
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1170.2 665 88.9
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1167.1 665 88.1
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1165.6 671 87.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1164.4 673 87.5
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1163.3 671 87.3
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1160.6 665 87.7
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1159.4 672 86.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1158.7 672 86.2
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1156.7 672 86.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1154.8 671 86.7
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1154.8 671 86.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1150.6 671 86.6
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1147.5 671 84.8
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1136.7 673 85.1
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 671 85.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1133.6 671 85.4
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1132.9 665 85.4
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 701 83.3
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1128.6 673 86.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1126.3 668 84.7
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 671 84.6
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 673 84.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1125.5 667 85.6
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1124.0 667 85.3
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 674 84.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 667 84.3
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1120.1 671 84.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1119.8 672 84.8
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 667 85.0
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 668 85.2
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 693 82.1
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 662 84.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 648 86.3
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 648 86.3
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1114.8 661 84.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 671 83.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 673 83.2
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 672 83.8
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 670 83.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 679 82.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 659 84.5
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1109.0 666 83.8
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1107.0 673 82.2
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 688 82.6
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1105.5 658 84.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1105.1 666 83.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 705 80.4
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 674 82.6
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1097.8 662 82.8
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 688 81.1
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1095.1 677 82.1
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 668 81.7
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 668 81.6
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 662 82.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 662 82.3
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 676 81.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 644 85.2
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 672 81.0
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 668 81.1
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 682 80.4
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 672 81.7
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 666 81.1
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 665 80.5
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 9.2e-312 1072.8 690 79.1
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.0e-309 1066.2 699 77.5
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 7.3e-308 1060.1 731 75.4
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 9.8e-305 1049.7 671 79.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 2.9e-304 1048.1 648 79.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.0e-301 1039.6 755 73.1
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.8e-298 1028.9 640 80.3
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-297 1026.2 695 77.0
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.9e-295 1018.8 650 79.7
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.1e-295 1017.7 672 78.7
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.1e-284 983.0 671 76.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 3.6e-283 978.0 580 84.1
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 3.3e-276 954.9 670 74.8
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 9.0e-274 946.8 594 80.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 8.4e-272 940.3 591 79.7
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.4e-271 939.5 665 72.2
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.6e-270 936.0 626 73.2
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.9e-268 929.1 653 75.5
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 6.9e-266 920.6 673 72.4
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.6e-265 918.7 650 71.2
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 5.8e-265 917.5 662 69.8
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 5.1e-261 904.4 637 74.1
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.7e-259 898.3 670 67.6
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.1e-258 896.7 509 86.2
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.5e-254 881.7 708 67.5
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.9e-250 867.5 707 66.3
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 7.9e-238 827.4 443 91.6
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.9e-216 755.7 464 78.7
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.0e-205 720.7 670 56.0
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.3e-200 703.7 374 96.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 7.3e-183 644.8 382 81.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-181 641.0 549 62.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 9.9e-180 634.4 364 88.2
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.4e-178 628.6 366 86.1
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.6e-177 627.1 668 51.6
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.3e-175 619.0 387 81.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 2.1e-174 616.7 641 52.4
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 9.3e-146 521.5 303 85.8
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.3e-143 512.7 367 73.6
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 5.6e-143 512.3 623 50.9
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.5e-138 496.9 305 80.7
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-135 485.3 304 79.6
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 4.5e-116 422.9 295 74.6
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-111 408.3 467 52.0
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.4e-80 305.1 214 72.0
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.3e-80 304.3 213 74.6
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 4.0e-64 250.4 174 74.1
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.1e-56 225.7 234 57.7
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.4e-53 215.3 221 57.0
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-52 212.2 249 51.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.7e-51 208.4 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-50 205.3 200 54.0
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 4.0e-40 170.6 415 33.7
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 7.1e-37 159.8 189 49.2
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.6e-36 157.1 468 34.2
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.0e-35 156.0 87 86.2
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.3e-35 155.6 87 86.2
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.1e-34 152.5 87 85.1
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 3.3e-34 151.0 86 89.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 3.8e-30 137.5 107 64.5
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 6.0e-28 130.2 86 76.7
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.2e-23 115.9 136 48.5
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 80.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 80.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.8e-19 102.1 82 68.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 5.1e-19 100.5 54 88.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 6.7e-19 100.1 55 87.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.3e-17 93.6 82 65.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 6.9e-16 90.1 96 58.3
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 9.0e-16 89.7 201 35.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 89.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 89.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 7.2e-13 80.1 98 53.1
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.2e-12 79.3 63 71.4
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.0e-11 76.3 68 52.9
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.4e-08 65.9 105 43.8
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.9e-08 63.5 46 76.1
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.2e-07 62.8 68 52.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.0e-07 62.0 43 62.8
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.2e-06 58.5 40 65.0
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 3.8e-06 57.8 37 81.1
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 6.5e-06 57.0 40 72.5
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 8.5e-06 56.6 33 90.9


User provided reference genes

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