Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.8e-133 479.2 228 100.0
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.9e-114 416.0 232 88.4
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 5.1e-96 354.8 216 80.6
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 5.0e-67 258.5 212 65.6
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 3.2e-29 132.9 93 60.2
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 5.0e-27 125.6 215 37.7
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 8.6e-27 124.8 197 37.1
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.1e-26 124.4 200 37.0
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 2.5e-26 123.2 87 60.9
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.6e-26 122.1 128 47.7
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 9.5e-26 121.3 94 55.3
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 4.7e-25 119.0 103 51.5
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 4.7e-25 119.0 96 53.1
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 4.7e-25 119.0 98 55.1
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.1e-25 118.6 159 37.7
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 1.4e-24 117.5 96 53.1
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 1.4e-24 117.5 91 53.8
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 1.4e-24 117.5 94 53.2
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 2.3e-24 116.7 91 53.8
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 2.3e-24 116.7 94 53.2
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.1e-24 116.3 94 52.1
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.2e-24 115.5 159 36.5
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.2e-23 114.4 94 54.3
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 1.2e-23 114.4 220 35.5
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.5e-23 114.0 119 46.2
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.0e-23 113.6 204 33.8
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 2.0e-23 113.6 85 55.3
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.6e-23 113.2 91 54.9
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 4.4e-23 112.5 91 54.9
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 4.4e-23 112.5 91 54.9
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 5.8e-23 112.1 94 52.1
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 1.7e-22 110.5 198 34.3
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.7e-22 110.5 107 48.6
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.7e-22 110.5 94 52.1
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.7e-22 110.5 90 53.3
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.7e-22 110.5 86 52.3
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.2e-22 110.2 190 34.2
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.2e-22 110.2 107 48.6
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 2.2e-22 110.2 79 58.2
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.2e-22 110.2 183 37.2
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 3.7e-22 109.4 202 35.6
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 4.9e-22 109.0 93 52.7
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 4.9e-22 109.0 201 32.8
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 4.9e-22 109.0 82 58.5
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 4.9e-22 109.0 93 50.5
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.9e-22 109.0 93 52.7
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 6.4e-22 108.6 93 52.7
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 6.4e-22 108.6 94 51.1
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 8.3e-22 108.2 196 34.7
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 1.1e-21 107.8 200 34.0
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.1e-21 107.8 86 55.8
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.4e-21 107.5 84 53.6
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.4e-21 107.5 88 52.3
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.4e-21 106.7 88 52.3
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 2.4e-21 106.7 91 51.6
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 3.2e-21 106.3 89 50.6
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 4.1e-21 105.9 86 52.3
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.1e-21 105.9 137 39.4
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.4e-21 105.5 144 40.3
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 5.4e-21 105.5 86 52.3
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 5.4e-21 105.5 91 52.7
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 5.4e-21 105.5 122 41.0
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 7.0e-21 105.1 94 51.1
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 9.2e-21 104.8 87 52.9
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 1.2e-20 104.4 214 35.0
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.2e-20 104.4 94 52.1
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.2e-20 104.4 79 55.7
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 1.6e-20 104.0 91 48.4
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.6e-20 104.0 90 45.6
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.0e-20 103.6 87 49.4
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.7e-20 103.2 94 47.9
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 4.6e-20 102.4 86 54.7
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 4.6e-20 102.4 81 50.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.0e-20 102.1 86 50.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 6.0e-20 102.1 92 52.2
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 6.0e-20 102.1 88 48.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 6.0e-20 102.1 104 46.2
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 7.8e-20 101.7 199 31.7
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.8e-20 101.7 159 34.6
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 1.0e-19 101.3 79 57.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 1.0e-19 101.3 96 51.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 1.0e-19 101.3 129 45.7
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.0e-19 101.3 73 57.5
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.0e-19 101.3 99 49.5
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.3e-19 100.9 89 49.4
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.3e-19 100.9 82 54.9
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.3e-19 100.9 86 52.3
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-19 100.9 93 50.5
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.7e-19 100.5 80 57.5
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.3e-19 100.1 80 55.0
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.3e-19 100.1 117 40.2
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 2.3e-19 100.1 190 32.1
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.0e-19 99.8 148 39.9
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.9e-19 99.4 82 51.2
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 3.9e-19 99.4 190 32.6
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.9e-19 99.4 137 40.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 5.0e-19 99.0 91 49.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 5.0e-19 99.0 90 48.9
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 5.0e-19 99.0 91 48.4
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 5.0e-19 99.0 89 48.3
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 6.6e-19 98.6 112 44.6
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 8.6e-19 98.2 112 44.6
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 8.6e-19 98.2 190 32.1
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 8.6e-19 98.2 155 37.4
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 8.6e-19 98.2 97 47.4
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 8.6e-19 98.2 84 48.8
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.1e-18 97.8 83 48.2
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.1e-18 97.8 83 53.0
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 1.1e-18 97.8 100 47.0
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 1.1e-18 97.8 84 53.6
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.1e-18 97.8 81 48.1
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.5e-18 97.4 89 44.9
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.5e-18 97.4 120 43.3
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.5e-18 97.4 120 43.3
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.9e-18 97.1 105 41.0
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.9e-18 97.1 112 44.6
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.9e-18 97.1 97 46.4
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.9e-18 97.1 90 47.8
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.9e-18 97.1 91 47.3
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 2.5e-18 96.7 86 47.7
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.5e-18 96.7 94 46.8
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 2.5e-18 96.7 94 46.8
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.3e-18 96.3 91 49.5
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.3e-18 95.9 81 50.6
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 4.3e-18 95.9 87 46.0
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.6e-18 95.5 145 34.5
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 7.3e-18 95.1 94 46.8
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 7.3e-18 95.1 168 35.1
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 7.3e-18 95.1 122 36.9
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 9.5e-18 94.7 82 48.8
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-17 94.4 89 48.3
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.2e-17 94.4 87 50.6
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 2.1e-17 93.6 94 46.8
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.8e-17 93.2 92 47.8
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.8e-17 93.2 198 29.3
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.8e-17 93.2 94 43.6
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 3.6e-17 92.8 79 53.2
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 4.7e-17 92.4 213 31.0
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.1e-16 91.3 86 45.3
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.4e-16 90.9 80 51.2
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 1.4e-16 90.9 87 47.1
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.8e-16 90.5 94 43.6
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-16 90.5 81 50.6
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.8e-16 90.5 91 44.0
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 2.3e-16 90.1 89 51.7
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 3.1e-16 89.7 94 44.7
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 6.8e-16 88.6 95 44.2
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 6.8e-16 88.6 92 43.5
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 6.8e-16 88.6 86 43.0
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.0e-15 87.0 79 49.4
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 3.4e-15 86.3 95 45.3
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 4.4e-15 85.9 83 47.0
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 9.8e-15 84.7 81 48.1
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.3e-14 84.3 81 48.1
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.3e-14 84.3 129 40.3
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 4.9e-14 82.4 81 48.1
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 4.9e-14 82.4 81 48.1
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 6.4e-14 82.0 99 42.4
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-13 81.3 94 39.4
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.9e-13 80.5 78 44.9
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 4.1e-13 79.3 92 42.4
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 4.1e-13 79.3 91 44.0
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 5.4e-13 79.0 86 43.0
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 4.6e-12 75.9 89 39.3
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 4.6e-12 75.9 83 39.8
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 2.3e-11 73.6 89 39.3
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 5.1e-11 72.4 88 36.4
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 6.6e-11 72.0 88 36.4
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 5.6e-10 68.9 56 48.2
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.2e-09 67.8 102 35.3
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 2.1e-09 67.0 85 38.8
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 2.8e-09 66.6 98 33.7
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 3.6e-09 66.2 56 51.8
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.7e-09 65.9 53 52.8
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.2e-07 61.2 52 46.2
CSS0046958 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D010012 2.6e-07 60.1 47 51.1
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 7.6e-07 58.5 32 75.0
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 9.9e-07 58.2 47 55.3
unitig_46.g18390 Utricularia gibba HOM05D000399 ORTHO05D000304 1.3e-06 57.8 123 34.1
EL10Ac1g00162 Beta vulgaris HOM05D000399 ORTHO05D000304 3.7e-06 56.2 92 35.9
CSS0024796 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.9e-06 55.8 89 36.0


User provided reference genes

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