Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 4.6e-208 727.6 361 100.0
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.1e-192 675.6 364 93.7
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 9.5e-97 357.8 402 52.0
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.2e-93 346.7 388 50.0
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 4.9e-93 345.5 401 50.9
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.4e-92 344.0 400 49.8
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.1e-89 334.3 372 51.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 9.6e-89 331.3 398 48.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 1.2e-88 330.9 399 49.6
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 4.0e-87 325.9 403 48.9
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 5.2e-87 325.5 394 47.7
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 2.0e-86 323.6 408 48.5
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.2e-85 320.1 401 47.9
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 4.9e-85 318.9 384 47.9
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 6.4e-85 318.5 392 48.7
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.1e-84 317.8 395 47.6
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 2.4e-84 316.6 368 50.0
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 1.6e-83 313.9 379 53.6
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 3.5e-83 312.8 400 46.8
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 5.1e-82 308.9 405 47.2
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 8.7e-82 308.1 410 47.8
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 7.3e-81 305.1 390 47.9
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 2.2e-77 293.5 460 43.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.9e-77 293.1 382 49.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.9e-77 292.4 384 45.3
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.1e-76 291.2 399 44.6
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.1e-75 287.0 427 46.1
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.0e-74 284.6 441 42.9
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 3.9e-74 282.7 389 47.0
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.5e-73 280.8 433 44.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.3e-72 277.7 433 41.6
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.1e-71 274.6 395 43.5
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 2.0e-70 270.4 290 51.0
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 2.6e-70 270.0 390 43.6
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 3.4e-70 269.6 434 43.1
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 9.9e-70 268.1 397 44.6
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.3e-69 267.7 429 42.4
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.4e-68 264.2 427 42.4
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.4e-68 264.2 398 43.2
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.4e-68 263.5 413 42.9
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 4.2e-68 262.7 385 45.5
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.6e-67 260.8 437 40.5
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 2.1e-67 260.4 395 43.5
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.5e-67 259.6 401 44.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 4.6e-67 259.2 377 43.0
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 7.9e-67 258.5 403 42.7
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.3e-66 257.7 409 41.6
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 2.3e-66 256.9 395 43.0
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.3e-66 256.9 407 42.3
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 5.1e-66 255.8 392 43.4
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 8.7e-66 255.0 390 43.1
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.5e-65 254.2 440 40.9
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.9e-65 253.8 380 44.7
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 3.3e-65 253.1 393 42.5
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 5.6e-65 252.3 266 53.8
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 5.6e-65 252.3 390 41.8
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 6.2e-64 248.8 506 37.2
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 5.3e-63 245.7 452 40.0
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.2e-62 244.6 406 43.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.0e-62 243.8 390 41.8
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.5e-62 242.7 524 35.5
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 5.8e-62 242.3 336 46.4
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 6.5e-61 238.8 403 41.2
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 6.5e-61 238.8 413 41.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 1.6e-59 234.2 363 45.2
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-59 233.4 316 46.2
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 3.5e-59 233.0 388 40.5
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.6e-59 232.6 283 50.9
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.0e-58 231.5 283 48.1
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.8e-58 230.7 280 47.1
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-57 228.0 384 40.4
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.9e-57 227.3 407 38.6
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 8.2e-56 221.9 295 46.4
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 3.1e-55 219.9 410 40.5
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.1e-55 219.9 460 37.2
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.2e-54 218.0 456 37.7
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 3.4e-54 216.5 448 38.2
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 8.5e-53 211.8 416 37.7
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.1e-52 211.5 341 43.4
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 9.3e-52 208.4 418 36.1
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 9.3e-52 208.4 392 38.0
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 4.6e-51 206.1 429 35.7
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.3e-50 204.5 447 36.2
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 1.8e-50 204.1 420 35.7
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.9e-49 200.7 402 36.1
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.2e-48 197.2 418 34.2
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.8e-48 196.8 426 35.4
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 4.1e-47 193.0 421 36.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 7.7e-46 188.7 445 33.0
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.3e-45 188.0 401 36.2
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 5.5e-44 182.6 394 35.5
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 6.1e-43 179.1 359 37.3
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 4.2e-36 156.4 399 33.1
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 5.5e-36 156.0 237 44.7
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 6.7e-34 149.1 408 32.4
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.7e-29 134.4 374 32.9
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.5e-28 129.4 201 40.8
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 5.7e-25 119.4 227 38.3
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 2.2e-21 107.5 212 39.2
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 5.7e-17 92.8 235 31.9
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-15 88.6 63 65.1
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-15 88.6 63 65.1
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.0e-13 79.7 60 63.3
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.0e-13 79.7 60 63.3
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 7.2e-12 75.9 90 50.0
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.1e-11 72.8 85 43.5
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.3e-10 70.9 86 45.3
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 4.5e-06 56.6 71 39.4
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 5.9e-06 56.2 286 30.1


User provided reference genes

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