Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 0.0e+00 1260.7 658 100.0
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 0.0e+00 1127.9 658 88.6
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 5.5e-276 954.1 673 77.1
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 3.7e-139 499.6 466 62.0
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 4.9e-91 339.7 788 33.8
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 5.8e-84 316.2 690 35.7
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.1e-82 312.0 681 35.1
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.3e-79 300.1 671 33.5
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 7.3e-79 299.3 696 34.6
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.6e-78 297.0 669 34.2
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.4e-77 295.0 757 33.4
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 4.0e-77 293.5 694 34.3
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 2.0e-76 291.2 647 35.2
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 2.6e-76 290.8 815 33.3
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 3.4e-76 290.4 692 34.2
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 7.6e-76 289.3 727 33.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.9e-74 284.6 722 33.9
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 2.4e-74 284.3 681 32.0
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.1e-73 281.2 799 30.8
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 4.6e-73 280.0 663 32.9
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 8.7e-72 275.8 430 40.7
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.1e-71 275.4 692 32.2
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.1e-71 275.4 698 32.7
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.3e-70 271.9 717 32.2
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 6.2e-70 269.6 673 33.7
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 6.2e-70 269.6 711 32.1
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 8.1e-70 269.2 711 31.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-69 268.9 678 33.0
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.1e-69 268.9 678 31.0
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 9.0e-69 265.8 677 33.5
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 1.5e-68 265.0 678 32.0
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.6e-68 264.2 694 32.9
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 3.4e-68 263.8 688 32.6
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 5.8e-68 263.1 671 33.2
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 9.9e-68 262.3 698 33.4
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.2e-67 261.2 698 31.7
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 3.8e-67 260.4 720 31.8
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.1e-66 258.8 721 32.2
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.4e-66 258.5 668 33.1
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.2e-66 257.3 717 31.4
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 9.3e-66 255.8 700 32.4
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.2e-65 255.4 719 32.4
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.2e-65 255.4 676 30.6
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.2e-65 255.4 724 31.5
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 4.6e-65 253.4 762 31.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 6.0e-65 253.1 736 31.2
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 6.0e-65 253.1 773 29.8
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 7.9e-65 252.7 692 30.9
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 3.0e-64 250.8 550 36.4
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.0e-64 250.8 753 30.0
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.0e-64 250.8 669 33.3
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 3.9e-64 250.4 802 30.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 3.9e-64 250.4 727 30.9
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 8.7e-64 249.2 689 29.8
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 8.7e-64 249.2 704 32.5
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 8.7e-64 249.2 677 30.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 5.6e-63 246.5 698 32.4
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 9.6e-63 245.7 683 33.1
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 6.2e-62 243.0 713 31.3
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.8e-61 241.5 383 42.0
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.4e-61 241.1 767 30.2
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 6.9e-61 239.6 688 31.1
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 9.0e-61 239.2 725 27.6
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.2e-60 238.8 680 30.3
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.0e-59 235.7 732 29.8
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 1.7e-59 235.0 666 32.1
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 2.2e-59 234.6 787 29.2
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 3.8e-59 233.8 619 33.8
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.9e-58 231.5 721 30.7
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.2e-58 230.3 404 40.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 4.2e-58 230.3 725 27.6
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 1.2e-57 228.8 391 39.4
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 5.1e-56 223.4 691 30.4
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.1e-55 222.2 731 29.1
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.5e-55 221.1 741 29.1
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 3.3e-55 220.7 739 29.1
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 3.3e-55 220.7 679 32.0
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 7.4e-55 219.5 737 28.6
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.3e-54 218.8 652 29.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 2.1e-54 218.0 381 38.6
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 8.2e-54 216.1 615 29.8
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.2e-54 216.1 738 28.3
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 6.9e-53 213.0 432 33.8
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 4.5e-52 210.3 401 36.4
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 5.9e-52 209.9 462 34.8
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 2.9e-51 207.6 315 40.3
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.9e-51 207.6 415 37.6
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 3.8e-51 207.2 791 27.9
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.2e-50 204.1 409 34.7
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.2e-50 203.8 515 32.4
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.2e-49 202.2 680 29.1
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.0e-48 199.1 450 33.1
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.3e-48 198.0 652 29.0
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 3.0e-48 197.6 447 34.7
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 2.0e-44 184.9 686 27.3
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 7.2e-42 176.4 224 44.2
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 9.4e-42 176.0 623 29.5
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 9.7e-39 166.0 628 29.0
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 6.1e-33 146.7 283 38.2
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 4.8e-30 137.1 191 39.8
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.3e-29 133.7 232 35.8
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 7.0e-29 133.3 402 29.9
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.0e-28 131.7 278 34.5
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.5e-26 125.6 135 48.9
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.6e-25 122.1 102 62.7
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 3.0e-24 117.9 101 58.4
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.5e-23 115.5 166 42.2
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.2e-22 111.7 195 35.4
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.4e-21 109.0 175 36.0
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.9e-19 101.3 481 27.2
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 2.1e-17 95.1 99 51.5
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.1e-13 82.8 78 48.7
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 4.5e-12 77.4 59 66.1
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 5.0e-11 73.9 126 34.9
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.6e-11 73.2 166 33.1
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 1.5e-10 72.4 294 27.6
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 3.6e-09 67.8 137 35.0
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.0e-08 66.2 153 35.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.8e-08 65.5 81 48.1
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 6.8e-08 63.5 75 50.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 6.8e-08 63.5 75 50.7
ClCG00G000970 Citrullus lanatus HOM05D021786 ORTHO05D007244 3.4e-07 61.2 65 52.3
ClCG02G010930 Citrullus lanatus HOM05D021786 ORTHO05D007244 9.8e-07 59.7 65 50.8
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 6.3e-06 57.0 67 43.3


User provided reference genes

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