Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g447350 Chlamydomonas reinhardtii HOM05D001090 ORTHO05D006167 0.0e+00 1729.1 995 100.0
SEGI_00376 Sequoiadendron giganteum HOM05D001090 ORTHO05D006167 4.3e-22 111.3 728 22.5
BolC9t53069H Brassica oleracea HOM05D001090 ORTHO05D006167 3.4e-19 101.7 701 23.5
A09p01300 Brassica napus HOM05D001090 ORTHO05D006167 7.6e-19 100.5 701 23.4
BraA09t35795Z Brassica rapa HOM05D001090 ORTHO05D006167 7.6e-19 100.5 701 23.4
PGR142G4102 Punica granatum HOM05D001090 ORTHO05D006167 1.7e-18 99.4 725 21.2
BcaC04g24072 Brassica carinata HOM05D001090 ORTHO05D006167 2.9e-18 98.6 701 23.4
CARHR249790 Cardamine hirsuta HOM05D001090 ORTHO05D006167 2.9e-18 98.6 706 22.0
C09p01350 Brassica napus HOM05D001090 ORTHO05D006167 3.8e-18 98.2 701 23.3
Carub.0006s3541 Capsella rubella HOM05D001090 ORTHO05D006167 6.4e-18 97.4 703 22.6
Nn4g25350 Nelumbo nucifera HOM05D001090 ORTHO05D006167 8.4e-18 97.1 664 20.9
BcaB01g02111 Brassica carinata HOM05D001090 ORTHO05D006167 2.4e-17 95.5 704 22.0
Thhalv10028421m.g Eutrema salsugineum HOM05D001090 ORTHO05D006167 2.4e-17 95.5 717 21.6
Sopen01g030630 Solanum pennellii HOM05D001090 ORTHO05D006167 3.2e-17 95.1 697 20.7
Sabra14G0082800 Salix brachista HOM05D001090 ORTHO05D006167 4.2e-17 94.7 696 21.8
Aa31LG5G1560 Aethionema arabicum HOM05D001090 ORTHO05D002687 1.6e-16 92.8 701 21.4
Manes.01G235000 Manihot esculenta HOM05D001090 ORTHO05D006167 2.1e-16 92.4 696 22.7
Sabra02G0129700 Salix brachista HOM05D001090 ORTHO05D006167 2.1e-16 92.4 698 22.2
Sp6g01660 Schrenkiella parvula HOM05D001090 ORTHO05D006167 2.7e-16 92.0 707 21.6
Manes.05G009100 Manihot esculenta HOM05D001090 ORTHO05D006167 4.6e-16 91.3 697 22.1
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 6.0e-16 90.9 701 21.8
arahy.Tifrunner.gnm1.ann1.XGP1KG Arachis hypogaea HOM05D001090 ORTHO05D006167 6.0e-16 90.9 701 21.8
CAN.G100.57 Capsicum annuum HOM05D001090 ORTHO05D006167 6.0e-16 90.9 697 20.7
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 6.0e-16 90.9 665 20.8
Glyma.03G224400 Glycine max HOM05D001090 ORTHO05D006167 6.0e-16 90.9 699 21.5
Migut.N00921 Erythranthe guttata HOM05D001090 ORTHO05D006167 7.8e-16 90.5 694 20.9
ClCG11G013170 Citrullus lanatus HOM05D001090 ORTHO05D006167 1.0e-15 90.1 665 20.5
Nn3g21945 Nelumbo nucifera HOM05D001090 ORTHO05D006167 1.0e-15 90.1 666 21.6
MSTRG.15096 Avicennia marina HOM05D001090 ORTHO05D006167 1.3e-15 89.7 697 21.7
MELO3C011813.2 Cucumis melo HOM05D001090 ORTHO05D006167 1.3e-15 89.7 665 21.1
Glyma.19G221300 Glycine max HOM05D001090 ORTHO05D006167 1.7e-15 89.4 669 21.4
Lsat_1_v5_gn_8_125581 Lactuca sativa HOM05D001090 ORTHO05D006167 1.7e-15 89.4 697 20.5
EL10Ac7g17290 Beta vulgaris HOM05D001090 ORTHO05D006167 3.9e-15 88.2 695 21.0
Psat3g016720 Pisum sativum HOM05D001090 ORTHO05D006167 3.9e-15 88.2 700 22.1
FAN26G0681 Fragaria x ananassa HOM05D001090 ORTHO05D006167 6.6e-15 87.4 665 20.9
Peaxi162Scf00309g00913 Petunia axillaris HOM05D001090 ORTHO05D006167 6.6e-15 87.4 697 20.8
Ah.15g091800 Amaranthus hybridus HOM05D001090 ORTHO05D006167 1.1e-14 86.7 731 22.4
QL12p034939 Quercus lobata HOM05D001090 ORTHO05D006167 1.5e-14 86.3 692 19.7
TPR.G2501 Trifolium pratense HOM05D001090 ORTHO05D006167 1.5e-14 86.3 700 21.7
CANSAT25G3150 Cannabis sativa HOM05D001090 ORTHO05D006167 1.9e-14 85.9 665 21.1
Atru.chr5.863 Acer truncatum HOM05D001090 ORTHO05D006167 2.5e-14 85.5 667 21.4
Actinidia25871 Actinidia chinensis HOM05D001090 ORTHO05D006167 3.3e-14 85.1 667 21.1
Lalb_Chr02g0147141 Lupinus albus HOM05D001090 ORTHO05D006167 3.3e-14 85.1 739 21.5
Cc01_g21790 Coffea canephora HOM05D001090 ORTHO05D006167 4.3e-14 84.7 695 21.2
Medtr7g110640 Medicago truncatula HOM05D001090 ORTHO05D006167 5.6e-14 84.3 699 21.6
Duzib138G0040 Durio zibethinus HOM05D001090 ORTHO05D006167 7.3e-14 84.0 664 20.0
Sed0008475 Sechium edule HOM05D001090 ORTHO05D006167 1.2e-13 83.2 667 19.8
FAN23G2339 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.6e-13 82.8 665 20.8
TWI59G0772 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 1.6e-13 82.8 696 20.1
MD09G1290300 Malus domestica HOM05D001090 ORTHO05D006167 2.1e-13 82.4 662 20.8
Lalb_Chr18g0046391 Lupinus albus HOM05D001090 ORTHO05D006167 2.8e-13 82.0 669 20.6
Prupe.3G002800 Prunus persica HOM05D001090 ORTHO05D006167 2.8e-13 82.0 692 20.5
RcHm_v2.0_Chr3g0485911 Rosa chinensis HOM05D001090 ORTHO05D006167 2.8e-13 82.0 741 20.8
Cfa004911 Carpinus fangiana HOM05D001090 ORTHO05D006167 3.6e-13 81.6 733 20.5
ECA233G3948 Erigeron canadensis HOM05D001090 ORTHO05D006167 3.6e-13 81.6 700 20.3
FvH4_1g26250 Fragaria vesca HOM05D001090 ORTHO05D006167 3.6e-13 81.6 664 21.4
Haze_05146 Corylus avellana HOM05D001090 ORTHO05D006167 4.7e-13 81.3 662 19.9
TWI23G1021 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 4.7e-13 81.3 733 20.3
Ca_09245_v3 Cicer arietinum L. HOM05D001090 ORTHO05D006167 6.2e-13 80.9 700 21.7
FAN28G2823 Fragaria x ananassa HOM05D001090 ORTHO05D006167 8.1e-13 80.5 665 20.5
Lalb_Chr04g0260211 Lupinus albus HOM05D001090 ORTHO05D006167 8.1e-13 80.5 699 20.6
TAR365G0940 Trochodendron aralioides HOM05D001090 ORTHO05D006167 8.1e-13 80.5 665 21.2
GSVIVG01028251001 Vitis vinifera HOM05D001090 ORTHO05D006167 8.1e-13 80.5 668 21.1
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 1.1e-12 80.1 693 20.2
Gorai.008G134800 Gossypium raimondii HOM05D001090 ORTHO05D006167 1.4e-12 79.7 666 19.5
HanXRQChr17g0555271 Helianthus annuus HOM05D001090 ORTHO05D006167 1.4e-12 79.7 699 19.9
Lj1g0021730 Lotus japonicus HOM05D001090 ORTHO05D006167 1.4e-12 79.7 699 20.6
Nitab4.5_0000222g0360 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.4e-12 79.7 697 21.5
Nitab4.5_0003092g0010 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.4e-12 79.7 699 21.6
Duzib133G1021 Durio zibethinus HOM05D001090 ORTHO05D006167 1.8e-12 79.3 665 20.0
Gohir.D11G109400 Gossypium hirsutum HOM05D001090 ORTHO05D006167 1.8e-12 79.3 661 20.1
Gorai.007G117000 Gossypium raimondii HOM05D001090 ORTHO05D006167 2.4e-12 79.0 661 20.1
AUR62042130 Chenopodium quinoa HOM05D001090 ORTHO05D006167 6.9e-12 77.4 664 21.2
AUR62042131 Chenopodium quinoa HOM05D001090 ORTHO05D006167 6.9e-12 77.4 664 21.2
Gohir.D12G123700 Gossypium hirsutum HOM05D001090 ORTHO05D006167 9.0e-12 77.0 660 19.4
MD17G1284900 Malus domestica HOM05D001090 ORTHO05D006167 9.0e-12 77.0 662 20.4
Gohir.A11G104600 Gossypium hirsutum HOM05D001090 ORTHO05D006167 1.5e-11 76.3 661 20.0
Phvul.001G218200 Phaseolus vulgaris HOM05D001090 ORTHO05D006167 4.9e-10 71.2 390 21.5
Potri.014G112600 Populus trichocarpa HOM05D001090 ORTHO05D006167 4.9e-10 71.2 361 22.4
VMungo1383G1946 Vigna mungo HOM05D001090 ORTHO05D006167 4.9e-10 71.2 391 21.7
DCAR_002936 Daucus carota HOM05D001090 ORTHO05D006167 1.9e-09 69.3 436 23.2
SMO119G0041 Selaginella moellendorffii HOM05D001090 ORTHO05D006167 7.1e-09 67.4 289 24.6
Sc17g0000010 Simmondsia chinensis HOM05D001090 ORTHO05D006167 7.1e-09 67.4 408 24.0
CBR_g12710 Chara braunii HOM05D001159 ORTHO05D001712 9.3e-09 67.0 342 24.6
Eucgr.D01124 Eucalyptus grandis HOM05D001159 ORTHO05D001712 2.1e-08 65.9 166 31.3
Oeu038075.1 Olea europaea HOM05D001090 ORTHO05D006167 2.1e-08 65.9 388 21.6
CBR_g939 Chara braunii HOM05D001090 ORTHO05D006167 2.7e-08 65.5 254 25.2
COL.COLO4_23131 Corchorus olitorius HOM05D001090 ORTHO05D006167 4.6e-08 64.7 361 21.1
AagrBONN_evm.TU.Sc2ySwM_117.3828 Anthoceros agrestis HOM05D001159 ORTHO05D001712 6.0e-08 64.3 162 31.5
DCAR_005717 Daucus carota HOM05D001090 ORTHO05D006167 6.0e-08 64.3 363 23.4
MBI19_g30286_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D006167 6.0e-08 64.3 185 28.1
Zm00001eb090370 Zea mays HOM05D001159 ORTHO05D001712 6.0e-08 64.3 163 30.7
Solyc01g080850.4 Solanum lycopersicum HOM05D001090 ORTHO05D006167 7.8e-08 63.9 389 21.3
Haze_26778 Corylus avellana HOM05D001159 ORTHO05D001712 1.3e-07 63.2 151 29.1
Pp3c8_12300 Physcomitrium patens HOM05D001090 ORTHO05D006167 1.3e-07 63.2 288 24.7
MCO10G223 Micromonas commoda HOM05D001090 ORTHO05D006167 1.7e-07 62.8 385 23.4
THA.LOC104801326 Tarenaya hassleriana HOM05D001090 ORTHO05D006167 2.3e-07 62.4 433 21.2
AagrBONN_evm.TU.Sc2ySwM_228.1595 Anthoceros agrestis HOM05D001090 ORTHO05D006167 3.0e-07 62.0 461 23.6
Prupe.1G027900 Prunus persica HOM05D001159 ORTHO05D009291 3.0e-07 62.0 162 29.0
Zm00001eb340490 Zea mays HOM05D001090 ORTHO05D006167 3.9e-07 61.6 159 28.3
Os01g0321700 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D006167 5.1e-07 61.2 151 29.1
Ciclev10018812m.g Citrus clementina HOM05D001090 ORTHO05D006167 8.7e-07 60.5 429 22.6
AT4G01810 Arabidopsis thaliana HOM05D001090 ORTHO05D006167 1.1e-06 60.1 399 23.3
unitig_37.g12024 Utricularia gibba HOM05D001159 ORTHO05D001712 1.1e-06 60.1 166 26.5
CBR_g12056 Chara braunii HOM05D001159 ORTHO05D001712 1.9e-06 59.3 142 31.0
Oeu007522.3 Olea europaea HOM05D001090 ORTHO05D006167 1.9e-06 59.3 391 23.5
BcaC06g31684 Brassica carinata HOM05D001159 ORTHO05D009291 3.3e-06 58.5 143 30.1
A06p47760 Brassica napus HOM05D001159 ORTHO05D009291 3.3e-06 58.5 130 30.0
BraA06t27644Z Brassica rapa HOM05D001159 ORTHO05D009291 3.3e-06 58.5 130 30.0
AL6G51490 Arabidopsis lyrata HOM05D001090 ORTHO05D006167 4.3e-06 58.2 399 23.3
BcaC06g34637 Brassica carinata HOM05D001159 ORTHO05D009291 4.3e-06 58.2 130 28.5
C07p26240 Brassica napus HOM05D001159 ORTHO05D009291 4.3e-06 58.2 130 28.5
BolC7t43152H Brassica oleracea HOM05D001159 ORTHO05D009291 4.3e-06 58.2 130 28.5
Cpa.g.sc57.13 Carica papaya HOM05D001090 ORTHO05D006167 4.3e-06 58.2 151 29.8
Glyma.03G091800 Glycine max HOM05D001159 ORTHO05D001712 4.3e-06 58.2 278 25.5
Mapoly0082s0050 Marchantia polymorpha HOM05D001159 ORTHO05D001712 4.3e-06 58.2 302 23.2
Hund11624 Selenicereus undatus HOM05D001090 ORTHO05D006167 4.3e-06 58.2 239 24.7
CSS0011193 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D006167 5.6e-06 57.8 390 22.1
Pp3c3_29390 Physcomitrium patens HOM05D001159 ORTHO05D001712 5.6e-06 57.8 161 25.5
SGA_v2.0_scaffold198G41106 Striga asiatica HOM05D001090 ORTHO05D006167 5.6e-06 57.8 143 30.8
ClCG06G000690 Citrullus lanatus HOM05D001159 ORTHO05D001712 7.3e-06 57.4 159 26.4
unitig_22.g6790 Utricularia gibba HOM05D001159 ORTHO05D009291 7.3e-06 57.4 163 28.8


User provided reference genes

Program Settings