Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 3.4e-59 231.5 120 100.0
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.8e-13 79.0 100 38.0
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 3.7e-13 78.6 100 39.0
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 4.8e-13 78.2 100 38.0
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 8.3e-13 77.4 100 38.0
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 8.3e-13 77.4 100 38.0
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 8.3e-13 77.4 100 38.0
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 1.1e-12 77.0 100 38.0
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.1e-12 77.0 100 37.0
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.4e-12 76.6 100 38.0
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.4e-12 76.6 100 38.0
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 1.8e-12 76.3 100 37.0
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.8e-12 76.3 100 38.0
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.8e-12 76.3 100 37.0
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.8e-12 76.3 100 37.0
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.4e-12 75.9 100 37.0
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.4e-12 75.9 100 38.0
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 2.4e-12 75.9 100 37.0
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 3.1e-12 75.5 100 37.0
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.1e-12 75.5 104 35.6
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 4.1e-12 75.1 100 37.0
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 37.0
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 36.0
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 37.0
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 36.0
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 36.0
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 37.0
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 36.0
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 5.4e-12 74.7 100 36.0
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 36.0
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 36.0
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 36.0
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 36.0
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 36.0
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 7.0e-12 74.3 100 37.0
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 9.1e-12 73.9 100 37.0
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 9.1e-12 73.9 100 37.0
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 9.1e-12 73.9 100 37.0
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 9.1e-12 73.9 100 37.0
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 9.1e-12 73.9 100 37.0
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 9.1e-12 73.9 100 37.0
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 9.1e-12 73.9 100 36.0
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 9.1e-12 73.9 100 37.0
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 9.1e-12 73.9 104 35.6
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 9.1e-12 73.9 100 37.0
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 36.0
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 37.0
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 36.0
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 36.0
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.2e-11 73.6 110 35.5
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 36.0
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 37.0
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 37.0
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 37.0
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.2e-11 73.6 100 36.0
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 1.2e-11 73.6 110 36.4
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.6e-11 73.2 100 36.0
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 1.6e-11 73.2 100 37.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 1.6e-11 73.2 100 37.0
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 35.0
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 35.0
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 35.0
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 37.0
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 35.0
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 37.0
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 37.0
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 37.0
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 2.0e-11 72.8 100 36.0
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 35.0
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 2.7e-11 72.4 101 35.6
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.7e-11 72.4 100 36.0
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 3.5e-11 72.0 100 36.0
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 3.5e-11 72.0 100 36.0
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 3.5e-11 72.0 100 36.0
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 4.5e-11 71.6 100 35.0
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 4.5e-11 71.6 100 35.0
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 4.5e-11 71.6 100 36.0
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.9e-11 71.2 100 35.0
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 5.9e-11 71.2 100 35.0
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 5.9e-11 71.2 100 35.0
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 5.9e-11 71.2 100 35.0
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 5.9e-11 71.2 104 34.6
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 5.9e-11 71.2 110 35.5
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 7.7e-11 70.9 100 35.0
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.7e-11 70.9 100 35.0
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 7.7e-11 70.9 100 35.0
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 7.7e-11 70.9 110 33.6
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.0e-10 70.5 100 35.0
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 1.0e-10 70.5 100 35.0
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.0e-10 70.5 100 35.0
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.3e-10 70.1 84 38.1
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.3e-10 70.1 100 35.0
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.3e-10 70.1 110 33.6
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.7e-10 69.7 116 31.0
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.9e-10 68.9 100 35.0
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 3.8e-10 68.6 104 34.6
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 5.0e-10 68.2 100 30.0
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.0e-10 68.2 120 35.0
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 6.6e-10 67.8 110 35.5
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.6e-10 67.8 100 34.0
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 8.6e-10 67.4 82 40.2
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.5e-09 66.6 110 32.7
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 3.3e-09 65.5 100 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.2e-09 65.1 110 35.5
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 4.2e-09 65.1 111 34.2
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 7.2e-09 64.3 87 37.9
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 7.2e-09 64.3 108 34.3
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.1e-08 62.8 87 37.9
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.1e-08 62.8 110 31.8
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.6e-08 62.0 116 31.9
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 6.1e-08 61.2 77 37.7
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 1.0e-07 60.5 100 32.0
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 1.8e-07 59.7 130 28.5
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 4.0e-07 58.5 110 32.7
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 7.5e-06 54.3 110 31.8


User provided reference genes

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