Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g313185 Chlamydomonas reinhardtii HOM05D002336 ORTHO05D002526 2.6e-74 282.0 141 100.0
CBR_g17935 Chara braunii HOM05D002336 ORTHO05D002526 8.5e-09 64.3 128 32.0
Sc15g0006500 Simmondsia chinensis HOM05D002336 ORTHO05D002526 1.9e-08 63.2 135 30.4
TWI81G0046 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 1.9e-08 63.2 122 33.6
CsaV3_5G039120 Cucumis sativus L. HOM05D002336 ORTHO05D002526 4.2e-08 62.0 109 34.9
Os02g0116900 Oryza sativa ssp. japonica HOM05D002336 ORTHO05D002526 4.2e-08 62.0 110 34.5
AagrBONN_evm.TU.Sc2ySwM_344.663 Anthoceros agrestis HOM05D002336 ORTHO05D002526 7.2e-08 61.2 112 32.1
EL10Ac7g17722 Beta vulgaris HOM05D002336 ORTHO05D002526 1.2e-07 60.5 105 34.3
Ah.15g091530 Amaranthus hybridus HOM05D002336 ORTHO05D002526 1.6e-07 60.1 105 33.3
AUR62025415 Chenopodium quinoa HOM05D002336 ORTHO05D002526 1.6e-07 60.1 105 33.3
Cpa.g.sc3.343 Carica papaya HOM05D002336 ORTHO05D002526 2.7e-07 59.3 142 28.9
AUR62008826 Chenopodium quinoa HOM05D002336 ORTHO05D002526 4.7e-07 58.5 99 33.3
PGR102G1725 Punica granatum HOM05D002336 ORTHO05D002526 4.7e-07 58.5 139 28.1
ClCG11G005330 Citrullus lanatus HOM05D002336 ORTHO05D002526 6.1e-07 58.2 95 34.7
DCAR_014263 Daucus carota HOM05D002336 ORTHO05D002526 6.1e-07 58.2 139 28.1
CAN.G1463.20 Capsicum annuum HOM05D002336 ORTHO05D002526 8.0e-07 57.8 141 29.1
ClCG11G005590 Citrullus lanatus HOM05D002336 ORTHO05D002526 8.0e-07 57.8 109 33.0
MELO3C020022.2 Cucumis melo HOM05D002336 ORTHO05D002526 8.0e-07 57.8 109 33.0
CsaV3_6G002410 Cucumis sativus L. HOM05D002336 ORTHO05D002526 8.0e-07 57.8 109 33.0
Nitab4.5_0002183g0070 Nicotiana tabacum HOM05D002336 ORTHO05D002526 8.0e-07 57.8 141 29.1
Sed0026127 Sechium edule HOM05D002336 ORTHO05D002526 8.0e-07 57.8 109 33.0
Zm00001eb209440 Zea mays HOM05D002336 ORTHO05D002526 8.0e-07 57.8 104 35.6
Aqoxy6G00465 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 1.0e-06 57.4 113 31.9
Peaxi162Scf00098g01412 Petunia axillaris HOM05D002336 ORTHO05D002526 1.0e-06 57.4 147 29.3
SMO340G0158 Selaginella moellendorffii HOM05D002336 ORTHO05D002526 1.0e-06 57.4 120 30.0
Migut.N02435 Erythranthe guttata HOM05D002336 ORTHO05D002526 1.4e-06 57.0 141 29.8
Prupe.5G238000 Prunus persica HOM05D002336 ORTHO05D002526 1.4e-06 57.0 138 30.4
THA.LOC104799288 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 1.4e-06 57.0 109 33.0
Atru.chr8.85 Acer truncatum HOM05D002336 ORTHO05D002526 1.8e-06 56.6 109 32.1
BcaB05g21520 Brassica carinata HOM05D002336 ORTHO05D002526 1.8e-06 56.6 109 32.1
PGSC0003DMG400005907 Solanum tuberosum HOM05D002336 ORTHO05D002526 1.8e-06 56.6 141 28.4
TWI53G1839 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 1.8e-06 56.6 109 32.1
BcaB08g37172 Brassica carinata HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
BcaC03g13284 Brassica carinata HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
A02p00240 Brassica napus HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
A03p04330 Brassica napus HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
BolC2t06378H Brassica oleracea HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
BraA02t05008Z Brassica rapa HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
BraA03t09777Z Brassica rapa HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
CDE04G0107 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 2.3e-06 56.2 111 32.4
Pp3c9_19820 Physcomitrium patens HOM05D002336 ORTHO05D002526 2.3e-06 56.2 110 30.9
Sp6g33490 Schrenkiella parvula HOM05D002336 ORTHO05D002526 2.3e-06 56.2 109 32.1
Solyc06g073870.4 Solanum lycopersicum HOM05D002336 ORTHO05D002526 2.3e-06 56.2 141 28.4
Sopen06g030280 Solanum pennellii HOM05D002336 ORTHO05D002526 2.3e-06 56.2 141 28.4
C09p67630 Brassica napus HOM05D002336 ORTHO05D002526 3.0e-06 55.8 113 31.9
MD06G1233600 Malus domestica HOM05D002336 ORTHO05D002526 3.0e-06 55.8 126 31.0
QL06p031971 Quercus lobata HOM05D002336 ORTHO05D002526 3.0e-06 55.8 109 32.1
Thecc.01G114000 Theobroma cacao HOM05D002336 ORTHO05D002526 3.0e-06 55.8 109 32.1
AL6G20340 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
AT5G09920 Arabidopsis thaliana HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
A10p27560 Brassica napus HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
BolC9t59525H Brassica oleracea HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
BraA10t44808Z Brassica rapa HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
Cpa.g.sc191.12 Carica papaya HOM05D002336 ORTHO05D002526 4.0e-06 55.5 109 32.1
Glyma.05G189100 Glycine max HOM05D002336 ORTHO05D002526 4.0e-06 55.5 141 27.7
Rhsim02G0083000 Rhododendron simsii HOM05D002336 ORTHO05D002526 4.0e-06 55.5 141 28.4
HPP92_022163 Vanilla planifolia HOM05D002336 ORTHO05D002526 4.0e-06 55.5 135 28.1
Carub.0006s0836 Capsella rubella HOM05D002336 ORTHO05D002526 5.2e-06 55.1 109 32.1
CARHR203410 Cardamine hirsuta HOM05D002336 ORTHO05D002526 5.2e-06 55.1 109 32.1
Cc07_g16330 Coffea canephora HOM05D002336 ORTHO05D002526 5.2e-06 55.1 135 27.4
Nitab4.5_0000875g0080 Nicotiana tabacum HOM05D002336 ORTHO05D002526 5.2e-06 55.1 135 29.6
TAR628G0102 Trochodendron aralioides HOM05D002336 ORTHO05D002526 5.2e-06 55.1 121 29.8
GSVIVG01020782001 Vitis vinifera HOM05D002336 ORTHO05D002526 5.2e-06 55.1 109 31.2
Ciclev10026735m.g Citrus clementina HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Dinv42686 Davidia involucrata HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Duzib187G0505 Durio zibethinus HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Duzib264G0264 Durio zibethinus HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Gohir.A09G214900 Gossypium hirsutum HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Gohir.A10G084400 Gossypium hirsutum HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Gohir.D10G104250 Gossypium hirsutum HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Gorai.006G238100 Gossypium raimondii HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Gorai.011G113800 Gossypium raimondii HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
HanXRQChr15g0471591 Helianthus annuus HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Lalb_Chr07g0194481 Lupinus albus HOM05D002336 ORTHO05D002526 6.7e-06 54.7 141 27.0
Manes.08G141900 Manihot esculenta HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Manes.09G146500 Manihot esculenta HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
PSO170G6293 Papaver somniferum HOM05D002336 ORTHO05D002526 6.7e-06 54.7 139 25.9
PSO210G1518 Papaver somniferum HOM05D002336 ORTHO05D002526 6.7e-06 54.7 139 25.9
Potri.005G084900 Populus trichocarpa HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
Potri.007G080400 Populus trichocarpa HOM05D002336 ORTHO05D002526 6.7e-06 54.7 109 31.2
ATR0618G064 Amborella trichopoda HOM05D002336 ORTHO05D002526 8.8e-06 54.3 109 31.2
Glyma.03G088500 Glycine max HOM05D002336 ORTHO05D002526 8.8e-06 54.3 141 27.0
MBI06_g12321_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 8.8e-06 54.3 109 32.1


User provided reference genes

Program Settings