Gene: Pp3c9_19820
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c9_19820
- Transcript Identifier Pp3c9_19820V3.2
- Gene Type Coding gene
- Location Chr09 : 13412744-13413172 : negative
Gene Family Information
- ID HOM05D002336
- #Genes/#Species 290/97
- Phylogenetic origin
- ID ORTHO05D002526
- #Genes/#Species 282/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c9_19820V3.2
- pacid 32913932
- alias Pp1s89_20V6
- alias Phpat.009G077200
- alias Phypa_165470
- uniprot A9SKY3
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006366 | ISO | PLAZA Integrative Orthology | transcription by RNA polymerase II | AT5G09920 |
| GO:0016246 | IEA | GOA Database | RNA interference | |
| GO:0010426 | IEA | GOA Database | DNA methylation on cytosine within a CHH sequence | |
| GO:0000288 | IBA | GOA Database | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | |
| GO:0034402 | IBA | GOA Database | recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | |
| GO:0031990 | IBA | GOA Database | mRNA export from nucleus in response to heat stress | |
| GO:0006367 | IBA | GOA Database | transcription initiation from RNA polymerase II promoter | |
| GO:0045948 | IBA | GOA Database | positive regulation of translational initiation | |
| GO:0006352 | IEA | GOA Database | DNA-templated transcription, initiation | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0044237 | IEA | GOA Database | cellular metabolic process | |
| GO:0044237 | IEA | InterPro | cellular metabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031369 | IBA | GOA Database | translation initiation factor binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IBA | GOA Database | P-body | |
| GO:0000418 | IEA | GOA Database | RNA polymerase IV complex | |
| GO:0000419 | IEA | GOA Database | RNA polymerase V complex | |
| GO:0005665 | IBA IEA | GOA Database | RNA polymerase II, core complex | |
| GO:0030880 | IEA | GOA Database | RNA polymerase complex | |
| GO:0030880 | IEA | InterPro | RNA polymerase complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.1.6.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4 |