Gene: Sopen06g030280
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g030280
- Transcript Identifier Sopen06g030280.1
- Gene Type Coding gene
- Location Spenn-ch06 : 56381238-56383618 : negative
Gene Family Information
- ID HOM05D002336
- #Genes/#Species 290/97
- Phylogenetic origin
- ID ORTHO05D002526
- #Genes/#Species 282/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen06g030280.1
Descriptions
- Description Non-catalytic subunit specific to DNA-dependent RNA polymerase II | the ortholog of budding yeast RPB4) | NRPB4 | CONTAINS InterPro DOMAIN/s: HRDC-like , RNA polymerase II, Rpb4 , RNA polymerase II, Rpb4, core | BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0044237 | IEA | InterPro | cellular metabolic process | |
| GO:0006366 | ISO | PLAZA Integrative Orthology | transcription by RNA polymerase II | AT5G09920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0003899 | ISO | PLAZA Integrative Orthology | DNA-directed 5'-3' RNA polymerase activity | AT5G09920 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030880 | IEA | InterPro | RNA polymerase complex | |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT5G09920 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.1.6.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4 |