Gene: Zm00001eb209440

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb209440
  • Transcript Identifier Zm00001eb209440_T001
  • Gene Type Coding gene
  • Location 4 : 248643789-248644151 : positive

Gene Family Information

  • ID HOM05D002336
  • #Genes/#Species 290/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb209440_T001
  • pid Zm00001eb209440_P001
  • uniprot B6SLK8
  • uniprot A0A3L6F210
  • entrez 100282338
  • refseq NP_001148722.1
  • refseq NM_001155250.1
  • refseq NP_001152952.1
  • refseq NM_001159480.1
  • V4_identifier Zm00001d054033

Descriptions

  • Description Zm00001e025359
  • Description DNA-directed RNA polymerase II 16 kDa polypeptide
  • Description DNA-directed RNA polymerases IV and V subunit 4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034402
IBA
GOA Databaserecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
GO:0006366
ISO
PLAZA Integrative Orthologytranscription by RNA polymerase II AT5G09920
GO:0044237
IEA
GOA Databasecellular metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:0006352
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0045948
IBA
GOA Databasepositive regulation of translational initiation
GO:0006367
IBA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0031990
IBA
GOA DatabasemRNA export from nucleus in response to heat stress
GO:0000288
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0016246
IEA
GOA DatabaseRNA interference
GO:0010426
IEA
GOA DatabaseDNA methylation on cytosine within a CHH sequence

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0031369
IBA
GOA Databasetranslation initiation factor binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030880
IEA
GOA DatabaseRNA polymerase complex
GO:0030880
IEA
InterProRNA polymerase complex
GO:0005665
IBA
IEA
GOA DatabaseRNA polymerase II, core complex
GO:0000932
IBA
GOA DatabaseP-body
GO:0005634
IEA
GOA Databasenucleus
GO:0000418
IEA
GOA DatabaseRNA polymerase IV complex
GO:0000419
IEA
GOA DatabaseRNA polymerase V complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005574 RNA polymerase subunit RPB4/RPC9
IPR038324 Rpb4/RPC9 superfamily
IPR010997 HRDC-like superfamily
IPR006590 RNA polymerase Rpb4/RPC9, core
Mapman id Description
15.1.6.2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4