Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 3.5e-248 861.3 482 100.0
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 8.6e-69 265.4 490 39.2
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.2e-55 220.3 468 34.2
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 7.1e-55 219.2 537 33.3
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.1e-52 211.8 466 33.7
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.1e-51 207.6 474 35.4
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 6.2e-51 206.1 469 33.3
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 4.0e-50 203.4 523 31.7
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.2e-49 201.8 465 33.3
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.5e-49 201.4 465 34.2
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 2.6e-49 200.7 465 32.9
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 9.9e-49 198.7 248 41.9
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.3e-48 198.4 464 31.7
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-48 198.4 551 30.7
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.7e-48 198.0 518 31.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 4.9e-48 196.4 407 34.4
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.1e-47 195.3 480 33.1
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.1e-47 195.3 565 30.1
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-46 191.8 469 31.6
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 2.1e-46 191.0 458 33.8
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.7e-46 190.7 373 33.8
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 3.5e-46 190.3 461 32.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.5e-46 190.3 458 31.4
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 3.5e-46 190.3 474 31.2
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 4.6e-46 189.9 410 33.7
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.3e-45 188.3 495 31.3
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.7e-45 188.0 534 30.5
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.7e-45 188.0 458 31.4
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.3e-45 187.6 481 31.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.0e-45 187.2 467 31.0
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 3.0e-45 187.2 473 31.7
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 3.0e-45 187.2 407 32.9
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 3.0e-45 187.2 403 33.5
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 3.9e-45 186.8 462 31.4
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 5.1e-45 186.4 530 30.6
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 6.6e-45 186.0 402 33.1
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.5e-44 184.9 410 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.9e-44 184.5 436 31.4
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.9e-44 184.5 410 32.4
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 3.3e-44 183.7 423 33.8
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 3.3e-44 183.7 498 30.5
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.3e-44 183.7 502 32.7
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 4.3e-44 183.3 406 32.3
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 4.3e-44 183.3 464 32.5
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 4.3e-44 183.3 410 32.2
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 7.3e-44 182.6 406 32.3
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 9.6e-44 182.2 384 33.1
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 9.6e-44 182.2 499 32.3
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.3e-43 181.8 467 31.9
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.3e-43 181.8 461 31.7
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 2.1e-43 181.0 399 33.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.1e-43 181.0 500 34.4
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 2.8e-43 180.6 520 30.8
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.8e-43 180.6 469 31.8
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 2.8e-43 180.6 465 30.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 3.6e-43 180.3 402 33.1
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 3.6e-43 180.3 464 31.9
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 4.8e-43 179.9 402 32.8
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 4.8e-43 179.9 408 32.4
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 6.2e-43 179.5 410 32.7
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.4e-42 178.3 462 30.7
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.8e-42 177.9 469 30.7
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.4e-42 177.6 410 32.9
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.4e-42 177.6 543 30.6
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 2.4e-42 177.6 464 31.9
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 4.0e-42 176.8 468 29.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 5.3e-42 176.4 404 32.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 5.3e-42 176.4 464 31.5
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 9.0e-42 175.6 469 30.3
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.2e-41 175.3 449 31.2
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.5e-41 174.9 403 33.0
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.5e-41 174.9 399 32.3
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.0e-41 174.5 468 29.7
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 2.6e-41 174.1 468 31.6
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.6e-41 174.1 464 30.8
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 2.6e-41 174.1 540 29.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 2.6e-41 174.1 467 32.8
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 3.4e-41 173.7 498 29.1
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.4e-41 173.7 527 29.4
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.4e-41 173.7 469 30.1
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.4e-41 173.3 464 31.2
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 4.4e-41 173.3 388 33.0
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 7.6e-41 172.6 540 29.4
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 7.6e-41 172.6 396 32.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 9.9e-41 172.2 470 32.1
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.3e-40 171.8 464 31.2
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.7e-40 171.4 463 30.0
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.9e-40 170.6 458 29.7
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 3.8e-40 170.2 528 32.0
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 4.9e-40 169.9 472 30.5
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 6.4e-40 169.5 461 30.4
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 6.4e-40 169.5 398 31.7
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.1e-39 168.7 409 31.1
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 1.9e-39 167.9 480 31.7
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.4e-39 167.5 469 31.1
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 3.2e-39 167.2 402 31.8
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.6e-38 164.9 454 30.2
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 2.1e-38 164.5 467 29.6
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 2.1e-38 164.5 466 30.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 2.7e-38 164.1 399 33.6
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.7e-38 164.1 397 30.7
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 2.7e-38 164.1 493 30.2
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 7.9e-38 162.5 341 33.1
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 7.9e-38 162.5 540 28.1
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.3e-37 161.0 382 32.2
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.9e-37 160.2 382 31.9
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 3.9e-37 160.2 382 31.9
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.5e-36 158.3 487 29.2
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.3e-36 157.1 382 31.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.8e-35 154.1 387 31.5
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 2.8e-35 154.1 382 30.9
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 8.1e-35 152.5 389 30.3
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 8.1e-35 152.5 393 31.0
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 4.0e-34 150.2 388 29.6
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.4e-33 147.1 344 32.8
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 5.8e-33 146.4 359 30.4
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 3.8e-32 143.7 430 29.8
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 8.4e-32 142.5 389 28.8
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.4e-31 141.0 391 28.4
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 5.4e-31 139.8 391 28.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 3.0e-29 134.0 324 32.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.3e-26 123.2 187 35.8
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.1e-20 105.5 448 27.7
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.6e-19 101.7 352 26.7
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.9e-15 88.2 164 34.1
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.2e-14 85.5 164 33.5
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.2e-09 68.9 109 39.4
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 5.9e-09 66.6 199 29.1
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 7.7e-09 66.2 102 38.2
VMungo0464G1091 Vigna mungo HOM05D002288 ORTHO05D002894 6.5e-08 63.2 186 23.1
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 2.5e-07 61.2 80 41.2
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 7.2e-07 59.7 204 29.9
Glyma.07G100800 Glycine max HOM05D002288 ORTHO05D002894 1.2e-06 58.9 177 27.7
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 1.6e-06 58.5 97 37.1
Sed0026906 Sechium edule HOM05D002332 ORTHO05D002509 2.1e-06 58.2 200 25.5
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 7.9e-06 56.2 87 34.5


User provided reference genes

Program Settings