Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 2.6e-53 211.8 110 100.0
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 9.2e-35 150.2 96 72.9
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 1.6e-34 149.4 96 75.0
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 1.6e-34 149.4 97 73.2
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 2.1e-34 149.1 97 73.2
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 3.5e-34 148.3 91 76.9
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 3.5e-34 148.3 96 74.0
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 3.5e-34 148.3 96 74.0
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 6.0e-34 147.5 96 72.9
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 6.0e-34 147.5 96 70.8
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 6.0e-34 147.5 96 72.9
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 6.0e-34 147.5 96 72.9
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 6.0e-34 147.5 97 73.2
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 7.8e-34 147.1 100 72.0
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 7.8e-34 147.1 96 72.9
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 7.8e-34 147.1 96 72.9
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 7.8e-34 147.1 96 71.9
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 7.8e-34 147.1 91 74.7
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 7.8e-34 147.1 96 72.9
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 1.0e-33 146.7 96 72.9
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 1.0e-33 146.7 96 72.9
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 1.0e-33 146.7 96 74.0
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 1.0e-33 146.7 103 74.8
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 1.0e-33 146.7 96 72.9
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 1.0e-33 146.7 96 72.9
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 1.0e-33 146.7 100 72.0
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.0e-33 146.7 91 74.7
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 71.9
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 71.9
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 71.9
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 1.3e-33 146.4 97 72.2
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 72.9
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 72.9
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 1.3e-33 146.4 96 74.0
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 1.3e-33 146.4 92 73.9
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 1.7e-33 146.0 91 74.7
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.7e-33 146.0 96 71.9
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 2.3e-33 145.6 96 72.9
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 2.3e-33 145.6 96 72.9
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 2.3e-33 145.6 91 74.7
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 3.0e-33 145.2 96 71.9
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 3.0e-33 145.2 96 71.9
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 3.9e-33 144.8 96 72.9
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 3.9e-33 144.8 98 71.4
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 3.9e-33 144.8 96 70.8
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 3.9e-33 144.8 96 70.8
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 3.9e-33 144.8 95 71.6
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 3.9e-33 144.8 97 72.2
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 3.9e-33 144.8 96 72.9
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 6.6e-33 144.1 91 72.5
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 6.6e-33 144.1 96 72.9
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 6.6e-33 144.1 91 74.7
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 6.6e-33 144.1 91 74.7
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 6.6e-33 144.1 96 71.9
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 6.6e-33 144.1 94 73.4
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 6.6e-33 144.1 91 75.8
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 8.6e-33 143.7 96 71.9
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 8.6e-33 143.7 96 71.9
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 8.6e-33 143.7 96 71.9
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 8.6e-33 143.7 96 71.9
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 8.6e-33 143.7 96 71.9
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 8.6e-33 143.7 91 73.6
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 71.9
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 70.8
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 71.9
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 71.9
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 71.9
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 71.9
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 70.8
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 1.1e-32 143.3 96 68.8
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 1.5e-32 142.9 91 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 1.5e-32 142.9 96 72.9
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 1.5e-32 142.9 96 70.8
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 1.5e-32 142.9 96 71.9
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 1.5e-32 142.9 90 77.8
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 1.9e-32 142.5 98 70.4
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 1.9e-32 142.5 91 74.7
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 2.5e-32 142.1 96 71.9
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 2.5e-32 142.1 96 71.9
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 2.5e-32 142.1 96 71.9
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 2.5e-32 142.1 96 71.9
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 2.5e-32 142.1 96 71.9
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.3e-32 141.4 96 70.8
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.3e-32 141.4 96 70.8
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.3e-32 141.4 96 70.8
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.3e-32 141.4 96 70.8
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 5.6e-32 141.0 96 71.9
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 5.6e-32 141.0 96 71.9
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 5.6e-32 141.0 96 70.8
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 9.5e-32 140.2 96 69.8
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 2.1e-31 139.0 96 71.9
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 2.1e-31 139.0 96 71.9
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 2.1e-31 139.0 96 70.8
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 2.1e-31 139.0 103 68.0
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 2.1e-31 139.0 106 67.0
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 2.8e-31 138.7 96 70.8
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 2.8e-31 138.7 96 70.8
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 2.8e-31 138.7 96 70.8
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 2.8e-31 138.7 96 68.8
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 2.8e-31 138.7 95 71.6
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 3.6e-31 138.3 96 70.8
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 4.7e-31 137.9 95 70.5
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 4.7e-31 137.9 95 71.6
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 6.2e-31 137.5 108 63.9
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 6.2e-31 137.5 96 71.9
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 1.4e-30 136.3 106 65.1
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 2.3e-30 135.6 96 69.8
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 3.1e-30 135.2 120 60.0
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 3.1e-30 135.2 90 72.2
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 3.1e-30 135.2 95 70.5
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 4.0e-30 134.8 91 71.4
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 4.0e-30 134.8 91 71.4
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 4.0e-30 134.8 91 71.4
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 4.0e-30 134.8 91 71.4
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 5.2e-30 134.4 85 72.9
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 1.5e-29 132.9 94 68.1
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 7.5e-29 130.6 118 59.3
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 7.5e-29 130.6 116 57.8
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 9.9e-29 130.2 92 68.5
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 8.3e-28 127.1 84 72.6
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 1.4e-27 126.3 95 67.4
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 4.6e-26 121.3 141 50.4
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 1.7e-25 119.4 92 63.0
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 7.3e-24 114.0 79 69.6
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 1.6e-23 112.8 68 77.9
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 3.6e-23 111.7 106 56.6
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 3.6e-23 111.7 73 71.2
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 2.4e-22 109.0 73 71.2
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 4.0e-22 108.2 73 69.9
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 1.2e-21 106.7 67 74.6
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 3.4e-21 105.1 70 72.9
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 5.8e-21 104.4 72 69.4
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 1.3e-20 103.2 67 73.1
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 9.2e-19 97.1 58 77.6
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 7.8e-18 94.0 96 52.1
Sabra16G0165100 Salix brachista HOM05D005208 ORTHO05D006415 8.7e-17 90.5 198 34.3
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 1.9e-16 89.4 61 68.9
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 1.2e-13 80.1 53 71.7
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 1.5e-13 79.7 48 77.1
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 5.4e-11 71.2 93 47.3
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 9.3e-11 70.5 43 74.4
QL02p017866 Quercus lobata HOM05D005208 ORTHO05D006415 3.5e-10 68.6 42 71.4
Ah.08g209200 Amaranthus hybridus HOM05D005208 ORTHO05D006415 6.0e-10 67.8 43 69.8
MELO3C023964.2 Cucumis melo HOM05D005208 ORTHO05D006415 6.0e-10 67.8 43 69.8
Actinidia31052 Actinidia chinensis HOM05D005208 ORTHO05D006415 8.7e-09 63.9 49 67.3
PRCOL_00006284 Prasinoderma coloniale HOM05D003494 ORTHO05D004033 1.1e-06 57.0 82 39.0
CBR_g18907 Chara braunii HOM05D003494 ORTHO05D004033 1.4e-06 56.6 71 36.6
CAN.G1433.22 Capsicum annuum HOM05D003494 ORTHO05D004033 3.1e-06 55.5 83 36.1
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 5.3e-06 54.7 71 40.8
ECA248G1143 Erigeron canadensis HOM05D003494 ORTHO05D004033 5.3e-06 54.7 71 40.8
Pp3c5_21480 Physcomitrium patens HOM05D003494 ORTHO05D004033 5.3e-06 54.7 71 36.6
Pp3c21_9740 Physcomitrium patens HOM05D003494 ORTHO05D004033 6.9e-06 54.3 71 38.0
Sp3g09730 Schrenkiella parvula HOM05D003494 ORTHO05D004033 6.9e-06 54.3 71 38.0
Solyc05g055260.4 Solanum lycopersicum HOM05D003494 ORTHO05D004033 6.9e-06 54.3 83 34.9
Sopen05g033700 Solanum pennellii HOM05D003494 ORTHO05D004033 6.9e-06 54.3 83 34.9
PGSC0003DMG400023392 Solanum tuberosum HOM05D003494 ORTHO05D004033 6.9e-06 54.3 83 34.9
HPP92_001161 Vanilla planifolia HOM05D003494 ORTHO05D004033 6.9e-06 54.3 71 38.0
CAN.G645.27 Capsicum annuum HOM05D003494 ORTHO05D004033 9.0e-06 53.9 83 36.1
Glyma.11G086200 Glycine max HOM05D003494 ORTHO05D004033 9.0e-06 53.9 71 38.0
Manes.09G053800 Manihot esculenta HOM05D003494 ORTHO05D004033 9.0e-06 53.9 71 39.4
MCO05G021 Micromonas commoda HOM05D003494 ORTHO05D004033 9.0e-06 53.9 68 41.2


User provided reference genes

Program Settings