Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 5.2e-249 864.4 604 100.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.8e-53 214.2 582 38.1
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 5.8e-46 189.9 613 31.8
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.3e-45 188.7 522 29.9
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.9e-44 184.9 570 28.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.9e-44 184.9 528 28.8
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.2e-44 184.1 514 29.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 4.1e-44 183.7 534 30.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 5.4e-44 183.3 543 30.0
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 9.2e-44 182.6 548 29.0
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.2e-43 182.2 537 29.8
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.2e-43 182.2 554 29.1
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.6e-43 181.8 560 27.9
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-43 181.4 526 29.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.7e-43 181.0 552 29.7
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 3.5e-43 180.6 560 28.4
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 4.6e-43 180.3 560 27.7
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 4.6e-43 180.3 583 32.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.6e-43 180.3 558 28.0
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.6e-43 180.3 549 29.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-43 179.9 539 28.9
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 6.0e-43 179.9 577 28.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 7.8e-43 179.5 569 28.5
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 7.8e-43 179.5 528 28.4
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 7.8e-43 179.5 607 29.7
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.7e-42 178.3 511 29.2
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 2.3e-42 177.9 552 29.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.3e-42 177.9 601 28.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.3e-42 177.9 525 29.1
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.0e-42 177.6 520 33.1
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.0e-42 177.6 528 29.4
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.9e-42 177.2 574 32.6
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.9e-42 177.2 523 30.0
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.9e-42 177.2 530 29.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 5.0e-42 176.8 516 29.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 5.0e-42 176.8 556 28.4
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 6.6e-42 176.4 591 29.9
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.6e-42 176.4 792 28.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 6.6e-42 176.4 530 30.2
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.6e-42 176.4 549 28.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 6.6e-42 176.4 594 28.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 8.6e-42 176.0 562 31.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.1e-41 175.6 589 28.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.5e-41 175.3 598 27.6
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.5e-41 174.5 528 29.4
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.3e-41 173.7 548 28.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.3e-41 173.7 548 28.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.6e-41 173.3 547 31.4
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 5.6e-41 173.3 509 29.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.6e-41 173.3 549 29.9
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 5.6e-41 173.3 550 29.8
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 7.3e-41 172.9 547 31.4
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 7.3e-41 172.9 590 29.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 7.3e-41 172.9 550 29.5
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 9.5e-41 172.6 577 28.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-40 172.2 553 29.5
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-40 172.2 551 28.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-40 172.2 551 28.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.2e-40 172.2 522 31.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.2e-40 172.2 552 29.9
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-40 171.8 554 28.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-40 171.4 551 28.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.1e-40 171.4 549 28.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.8e-40 171.0 549 29.7
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 3.6e-40 170.6 527 28.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.6e-40 170.6 531 29.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 4.7e-40 170.2 607 29.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.7e-40 170.2 539 28.4
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 6.2e-40 169.9 539 28.4
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 8.0e-40 169.5 528 29.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 8.0e-40 169.5 540 29.1
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 8.0e-40 169.5 541 29.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-39 169.1 540 29.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.4e-39 168.7 583 28.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.4e-39 168.7 533 28.9
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.8e-39 168.3 533 28.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-39 168.3 539 28.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.8e-39 168.3 525 28.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.8e-39 168.3 547 28.7
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.3e-39 167.9 541 29.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.1e-39 167.5 551 28.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.0e-39 167.2 533 30.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 5.2e-39 166.8 526 28.7
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 6.8e-39 166.4 540 27.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.9e-39 166.0 531 28.6
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.2e-38 165.6 547 31.3
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.2e-38 165.6 572 27.8
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.5e-38 165.2 525 33.3
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-38 164.9 533 28.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 3.4e-38 164.1 540 28.7
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 4.4e-38 163.7 543 29.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 5.8e-38 163.3 586 27.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.8e-38 163.3 584 27.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.5e-38 162.9 536 28.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 7.5e-38 162.9 535 29.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 7.5e-38 162.9 527 29.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 9.8e-38 162.5 531 27.9
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 9.8e-38 162.5 611 28.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.3e-37 162.2 556 27.9
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.7e-37 161.8 522 29.3
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.7e-37 161.8 553 31.5
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.7e-37 161.8 584 31.0
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.9e-37 161.0 526 27.4
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 4.9e-37 160.2 555 27.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.4e-36 158.7 565 27.6
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.9e-36 158.3 528 27.5
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.1e-36 157.1 520 28.1
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 7.1e-36 156.4 557 27.5
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 9.2e-36 156.0 518 28.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.6e-35 155.2 511 27.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.6e-35 153.7 563 28.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-35 153.3 510 27.5
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 6.0e-35 153.3 525 27.4
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-34 152.5 562 26.5
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.3e-34 151.4 601 26.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.5e-33 147.9 487 29.2
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.1e-31 142.5 515 26.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.4e-30 137.5 537 26.8
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 5.8e-30 136.7 539 31.2
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.1e-28 132.5 116 57.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.4e-28 132.1 539 26.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.4e-28 131.3 517 27.7
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.4e-28 130.2 184 45.7
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.7e-26 125.2 116 54.3
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.3e-26 124.8 141 44.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.3e-26 124.8 156 47.4
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 6.6e-26 123.2 130 48.5
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 6.6e-26 123.2 166 44.0
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 8.6e-26 122.9 130 47.7
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-25 122.5 550 23.6
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-25 122.1 116 52.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 3.3e-25 120.9 472 26.3
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.6e-25 120.2 470 26.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 4.0e-23 114.0 141 43.3
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-21 107.1 108 49.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-18 99.0 125 39.2
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-18 99.0 125 39.2
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-18 97.8 140 39.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 6.6e-18 96.7 140 39.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.9e-17 95.1 140 38.6
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 7.3e-17 93.2 116 45.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-15 89.4 112 42.9
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-15 89.0 81 51.9
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 3.9e-10 70.9 164 31.7
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 6.6e-10 70.1 80 43.8


User provided reference genes

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