Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.221 Carica papaya HOM05D002199 ORTHO05D004947 1.5e-55 219.5 135 100.0
CSS0029265 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 3.9e-51 204.9 137 85.4
Duzib133G1030 Durio zibethinus HOM05D002199 ORTHO05D004947 5.0e-51 204.5 136 84.6
Gohir.D12G135200 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.1e-50 203.4 135 80.0
Gohir.D08G052400 Gossypium hirsutum HOM05D002199 ORTHO05D004947 3.3e-50 201.8 136 82.4
Gorai.004G052500 Gossypium raimondii HOM05D002199 ORTHO05D004947 3.3e-50 201.8 136 82.4
Gohir.A08G042600 Gossypium hirsutum HOM05D002199 ORTHO05D004947 5.6e-50 201.1 136 76.5
Duzib211G0610 Durio zibethinus HOM05D002199 ORTHO05D004947 1.2e-49 199.9 136 90.4
Sed0021569 Sechium edule HOM05D002199 ORTHO05D004947 1.6e-49 199.5 136 91.2
Lj1g0003572 Lotus japonicus HOM05D002199 ORTHO05D004947 2.1e-49 199.1 136 75.0
Glyma.03G213600 Glycine max HOM05D002199 ORTHO05D004947 8.1e-49 197.2 134 80.6
Potri.002G205700 Populus trichocarpa HOM05D002199 ORTHO05D004947 8.1e-49 197.2 137 78.1
Glyma.19G210402 Glycine max HOM05D002199 ORTHO05D004947 1.1e-48 196.8 98 98.0
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 1.4e-48 196.4 98 96.9
MELO3C018097.2 Cucumis melo HOM05D002199 ORTHO05D004947 1.8e-48 196.1 136 77.9
CsaV3_4G030890 Cucumis sativus L. HOM05D002199 ORTHO05D004947 1.8e-48 196.1 136 77.9
Sed0020542 Sechium edule HOM05D002199 ORTHO05D004947 1.8e-48 196.1 136 79.4
Gohir.A12G131300 Gossypium hirsutum HOM05D002199 ORTHO05D004947 3.1e-48 195.3 135 77.8
Sabra02G0153600 Salix brachista HOM05D002199 ORTHO05D004947 5.2e-48 194.5 98 95.9
GSVIVG01031139001 Vitis vinifera HOM05D002199 ORTHO05D004947 8.9e-48 193.7 98 96.9
Potri.014G130700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.2e-47 193.4 98 95.9
Gorai.008G146200 Gossypium raimondii HOM05D002199 ORTHO05D004947 1.5e-47 193.0 128 78.1
Lalb_Chr21g0306811 Lupinus albus HOM05D002199 ORTHO05D004947 1.5e-47 193.0 99 91.9
Manes.05G063400 Manihot esculenta HOM05D002199 ORTHO05D004947 1.5e-47 193.0 135 76.3
QL12p026659 Quercus lobata HOM05D002199 ORTHO05D004947 1.5e-47 193.0 98 95.9
QL12p027276 Quercus lobata HOM05D002199 ORTHO05D004947 1.5e-47 193.0 98 95.9
Thecc.01G298300 Theobroma cacao HOM05D002199 ORTHO05D004947 1.5e-47 193.0 136 79.4
ClCG09G010120 Citrullus lanatus HOM05D002199 ORTHO05D004947 2.0e-47 192.6 98 90.8
Hma1.2p1_1292F.1_g273770 Hydrangea macrophylla HOM05D002199 ORTHO05D004947 2.0e-47 192.6 98 95.9
Manes.09G170401 Manihot esculenta HOM05D002199 ORTHO05D004947 2.0e-47 192.6 137 79.6
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 2.6e-47 192.2 137 85.4
Dinv40337 Davidia involucrata HOM05D002199 ORTHO05D004947 2.6e-47 192.2 98 94.9
Eucgr.K03467 Eucalyptus grandis HOM05D002199 ORTHO05D004947 2.6e-47 192.2 98 90.8
arahy.Tifrunner.gnm1.ann1.BKDY12 Arachis hypogaea HOM05D002199 ORTHO05D004947 3.4e-47 191.8 96 94.8
Glyma.10G019100 Glycine max HOM05D002199 ORTHO05D004947 3.4e-47 191.8 95 97.9
VMungo0720G1966 Vigna mungo HOM05D002199 ORTHO05D004947 3.4e-47 191.8 98 95.9
MD03G1286000 Malus domestica HOM05D002199 ORTHO05D004947 4.4e-47 191.4 98 94.9
MD11G1305900 Malus domestica HOM05D002199 ORTHO05D004947 4.4e-47 191.4 98 94.9
PSO170G1601 Papaver somniferum HOM05D002199 ORTHO05D004947 5.8e-47 191.0 99 96.0
PSO210G6647 Papaver somniferum HOM05D002199 ORTHO05D004947 5.8e-47 191.0 99 96.0
Nn3g21455 Nelumbo nucifera HOM05D002199 ORTHO05D004947 7.5e-47 190.7 98 95.9
CsaV3_7G024630 Cucumis sativus L. HOM05D002199 ORTHO05D004947 9.8e-47 190.3 136 76.5
Glyma.02G155300 Glycine max HOM05D002199 ORTHO05D004947 9.8e-47 190.3 133 87.2
GSVIVG01027986001 Vitis vinifera HOM05D002199 ORTHO05D004947 9.8e-47 190.3 98 93.9
CANSAT25G1293 Cannabis sativa HOM05D002199 ORTHO05D004947 1.3e-46 189.9 95 96.8
CANSAT25G3340 Cannabis sativa HOM05D002199 ORTHO05D004947 1.3e-46 189.9 95 96.8
Ciclev10022685m.g Citrus clementina HOM05D002199 ORTHO05D004947 1.3e-46 189.9 137 89.1
PGR044G2002 Punica granatum HOM05D002199 ORTHO05D004947 1.3e-46 189.9 138 81.2
TPR.G34004 Trifolium pratense HOM05D002199 ORTHO05D004947 1.3e-46 189.9 98 94.9
COL.COLO4_23366 Corchorus olitorius HOM05D002199 ORTHO05D004947 1.7e-46 189.5 93 97.8
CSS0007987 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 2.2e-46 189.1 99 96.0
Phvul.001G206200 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 2.2e-46 189.1 134 91.8
Phvul.007G144000 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 2.9e-46 188.7 98 94.9
Prupe.8G259300 Prunus persica HOM05D002199 ORTHO05D004947 2.9e-46 188.7 99 89.9
Atru.chr5.2688 Acer truncatum HOM05D002199 ORTHO05D004947 3.7e-46 188.3 99 89.9
Lalb_Chr02g0143231 Lupinus albus HOM05D002199 ORTHO05D004947 4.9e-46 188.0 99 88.9
Manes.01G217600 Manihot esculenta HOM05D002199 ORTHO05D004947 4.9e-46 188.0 137 86.9
Sc05g0004040 Simmondsia chinensis HOM05D002199 ORTHO05D004947 4.9e-46 188.0 98 95.9
TAR362G0065 Trochodendron aralioides HOM05D002199 ORTHO05D004947 4.9e-46 188.0 98 93.9
Atru.chr5.1170 Acer truncatum HOM05D002199 ORTHO05D004947 8.3e-46 187.2 95 95.8
Dinv19707 Davidia involucrata HOM05D002199 ORTHO05D004947 8.3e-46 187.2 98 93.9
Aqoxy5G00738 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.1e-45 186.8 136 80.1
CSS0020039 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 1.1e-45 186.8 99 94.9
TWI14G0261 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 1.1e-45 186.8 98 93.9
MSTRG.16392 Avicennia marina HOM05D002199 ORTHO05D004947 1.4e-45 186.4 135 80.0
Ca_09150_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 1.4e-45 186.4 95 94.7
Nn4g25821 Nelumbo nucifera HOM05D002199 ORTHO05D004947 1.4e-45 186.4 98 95.9
Peaxi162Scf00037g01217 Petunia axillaris HOM05D002199 ORTHO05D004947 1.9e-45 186.0 99 93.9
Ciclev10002769m.g Citrus clementina HOM05D002199 ORTHO05D004947 2.4e-45 185.7 98 92.9
vmacro14997 Vaccinium macrocarpon HOM05D002199 ORTHO05D004947 3.2e-45 185.3 98 91.8
ATR0796G324 Amborella trichopoda HOM05D002199 ORTHO05D004947 5.4e-45 184.5 99 93.9
CiPaw.07G107000 Carya illinoinensis HOM05D002199 ORTHO05D004947 7.1e-45 184.1 98 91.8
Ca_10348_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 7.1e-45 184.1 98 90.8
MBI18_g08110_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 7.1e-45 184.1 99 93.9
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 7.1e-45 184.1 92 96.7
Nitab4.5_0003917g0030 Nicotiana tabacum HOM05D002199 ORTHO05D004947 1.2e-44 183.3 98 89.8
Aqoxy2G02974 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.6e-44 183.0 99 92.9
CiPaw.08G096800 Carya illinoinensis HOM05D002199 ORTHO05D004947 1.6e-44 183.0 98 86.7
Hund05416 Selenicereus undatus HOM05D002199 ORTHO05D004947 1.6e-44 183.0 133 74.4
Cc02_g34160 Coffea canephora HOM05D002199 ORTHO05D004947 2.7e-44 182.2 98 90.8
Psat3g021920 Pisum sativum HOM05D002199 ORTHO05D004947 2.7e-44 182.2 140 82.9
Sopen09g027730 Solanum pennellii HOM05D002199 ORTHO05D004947 2.7e-44 182.2 101 86.1
TAR455G0001 Trochodendron aralioides HOM05D002199 ORTHO05D004947 2.7e-44 182.2 97 92.8
QL03p020177 Quercus lobata HOM05D002199 ORTHO05D004947 3.5e-44 181.8 98 90.8
unitig_0.g657 Utricularia gibba HOM05D002199 ORTHO05D004947 3.5e-44 181.8 90 97.8
EL10Ac7g17474 Beta vulgaris HOM05D002199 ORTHO05D004947 4.6e-44 181.4 93 96.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 4.6e-44 181.4 91 95.6
TWI59G0539 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 4.6e-44 181.4 98 92.9
MSTRG.21624 Avicennia marina HOM05D002199 ORTHO05D004947 7.8e-44 180.6 95 87.4
CAN.G1459.13 Capsicum annuum HOM05D002199 ORTHO05D004947 7.8e-44 180.6 100 87.0
Nitab4.5_0003844g0070 Nicotiana tabacum HOM05D001134 ORTHO05D001035 7.8e-44 180.6 99 92.9
Oeu054128.1 Olea europaea HOM05D002199 ORTHO05D004947 7.8e-44 180.6 91 95.6
SHI15194 Sapria himalayana HOM05D002199 ORTHO05D004947 1.0e-43 180.3 95 90.5
AUR62033113 Chenopodium quinoa HOM05D002199 ORTHO05D004947 2.3e-43 179.1 93 95.7
TPR.G9614 Trifolium pratense HOM05D002199 ORTHO05D004947 2.3e-43 179.1 82 98.8
AUR62008655 Chenopodium quinoa HOM05D002199 ORTHO05D004947 3.9e-43 178.3 133 75.2
Migut.D00203 Erythranthe guttata HOM05D002199 ORTHO05D004947 3.9e-43 178.3 90 95.6
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 3.9e-43 178.3 134 70.1
Lj5g0015534 Lotus japonicus HOM05D002199 ORTHO05D004947 3.9e-43 178.3 93 92.5
MBI19_g09229_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 5.1e-43 177.9 97 92.8
RcHm_v2.0_Chr6g0293731 Rosa chinensis HOM05D002199 ORTHO05D004947 5.1e-43 177.9 137 70.1
Sopen01g043260 Solanum pennellii HOM05D002199 ORTHO05D004947 5.1e-43 177.9 137 76.6
HanXRQChr09g0248151 Helianthus annuus HOM05D002199 ORTHO05D004947 6.6e-43 177.6 94 87.2
Nitab4.5_0003181g0010 Nicotiana tabacum HOM05D002199 ORTHO05D004947 6.6e-43 177.6 99 84.8
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 6.6e-43 177.6 98 91.8
Solyc01g099740.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 6.6e-43 177.6 81 98.8
FvH4_2g25520 Fragaria vesca HOM05D002199 ORTHO05D004947 1.5e-42 176.4 134 69.4
FAN24G1953 Fragaria x ananassa HOM05D002199 ORTHO05D004947 1.5e-42 176.4 134 69.4
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.9e-42 176.0 83 98.8
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 1.9e-42 176.0 83 98.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.9e-42 176.0 96 93.8
HanXRQChr03g0074701 Helianthus annuus HOM05D002199 ORTHO05D004947 1.9e-42 176.0 95 87.4
Medtr7g108700 Medicago truncatula HOM05D002199 ORTHO05D004947 1.9e-42 176.0 100 91.0
Medtr8g058420 Medicago truncatula HOM05D002199 ORTHO05D004947 1.9e-42 176.0 100 91.0
Medtr8g058537 Medicago truncatula HOM05D002199 ORTHO05D004947 1.9e-42 176.0 100 91.0
Medtr8g091620 Medicago truncatula HOM05D002199 ORTHO05D004947 1.9e-42 176.0 100 91.0
THA.LOC104821724 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 3.3e-42 175.3 135 71.9
HPP92_006923 Vanilla planifolia HOM05D002199 ORTHO05D004947 5.6e-42 174.5 94 92.6
AL6G39230 Arabidopsis lyrata HOM05D002199 ORTHO05D004947 7.3e-42 174.1 135 76.3
Zm00001eb127790 Zea mays HOM05D002199 ORTHO05D004947 9.5e-42 173.7 83 96.4
Zm00001eb333500 Zea mays HOM05D002199 ORTHO05D004947 9.5e-42 173.7 83 96.4
AT5G27720 Arabidopsis thaliana HOM05D002199 ORTHO05D004947 1.6e-41 172.9 135 74.8
Os01g0256900 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D004947 2.1e-41 172.6 83 95.2
A09p05420 Brassica napus HOM05D002199 ORTHO05D004947 2.8e-41 172.2 91 93.4
C09p05900 Brassica napus HOM05D002199 ORTHO05D004947 2.8e-41 172.2 91 93.4
BolC9t53516H Brassica oleracea HOM05D002199 ORTHO05D004947 2.8e-41 172.2 91 93.4
BraA09t36180Z Brassica rapa HOM05D002199 ORTHO05D004947 2.8e-41 172.2 91 93.4
CARHR186240 Cardamine hirsuta HOM05D002199 ORTHO05D004947 2.8e-41 172.2 135 70.4
Lalb_Chr06g0163431 Lupinus albus HOM05D002199 ORTHO05D004947 2.8e-41 172.2 99 88.9
Thhalv10021732m.g Eutrema salsugineum HOM05D002199 ORTHO05D004947 3.6e-41 171.8 135 74.1
A06p37360 Brassica napus HOM05D002199 ORTHO05D004947 4.7e-41 171.4 82 96.3
C07p41100 Brassica napus HOM05D002199 ORTHO05D004947 4.7e-41 171.4 91 91.2
BolC7t44637H Brassica oleracea HOM05D002199 ORTHO05D004947 4.7e-41 171.4 91 91.2
BraA06t26659Z Brassica rapa HOM05D002199 ORTHO05D004947 4.7e-41 171.4 82 96.3
Carub.0006s2485 Capsella rubella HOM05D002199 ORTHO05D004947 4.7e-41 171.4 90 92.2
Sp2g20890 Schrenkiella parvula HOM05D002199 ORTHO05D004947 4.7e-41 171.4 82 96.3
Sp3g04360 Schrenkiella parvula HOM05D002199 ORTHO05D004947 4.7e-41 171.4 82 96.3
THA.LOC104818719 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 4.7e-41 171.4 82 96.3
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 2.3e-40 169.1 115 75.7
BcaB04g19685 Brassica carinata HOM05D002199 ORTHO05D004947 4.0e-40 168.3 135 79.3
BcaC04g23643 Brassica carinata HOM05D002199 ORTHO05D004947 4.0e-40 168.3 135 79.3
ECA248G3217 Erigeron canadensis HOM05D002199 ORTHO05D004947 4.0e-40 168.3 82 95.1
Lsat_1_v5_gn_5_190620 Lactuca sativa HOM05D002199 ORTHO05D004947 4.0e-40 168.3 82 92.7
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 5.2e-40 167.9 150 62.7
Oeu048345.1 Olea europaea HOM05D002199 ORTHO05D004947 5.2e-40 167.9 133 69.2
Actinidia21055 Actinidia chinensis HOM05D000147 ORTHO05D001254 1.2e-39 166.8 76 98.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.5e-39 166.4 93 88.2
Pp3c14_11180 Physcomitrium patens HOM05D002199 ORTHO05D004947 2.6e-39 165.6 82 92.7
AagrBONN_evm.TU.Sc2ySwM_228.5267 Anthoceros agrestis HOM05D002199 ORTHO05D004947 5.8e-39 164.5 82 92.7
Haze_04137 Corylus avellana HOM05D001134 ORTHO05D001035 4.9e-38 161.4 126 67.5
Aa31LG5G15860 Aethionema arabicum HOM05D002199 ORTHO05D004947 6.4e-38 161.0 138 72.5
Mapoly0002s0139 Marchantia polymorpha HOM05D002199 ORTHO05D004947 1.4e-37 159.8 95 82.1
CBR_g29529 Chara braunii HOM05D002199 ORTHO05D004947 1.2e-36 156.8 77 88.3
PGSC0003DMG400024713 Solanum tuberosum HOM05D001134 ORTHO05D001035 1.7e-35 152.9 110 69.1
MELO3C024092.2 Cucumis melo HOM05D002199 ORTHO05D004947 3.3e-34 148.7 118 67.8
Actinidia24830 Actinidia chinensis HOM05D002199 ORTHO05D004947 3.6e-33 145.2 77 93.5
Actinidia32227 Actinidia chinensis HOM05D002199 ORTHO05D004947 1.4e-32 143.3 77 92.2
MCO07G033 Micromonas commoda HOM05D002199 ORTHO05D004947 5.2e-32 141.4 82 76.8
Oeu054129.1 Olea europaea HOM05D002199 ORTHO05D004947 6.9e-32 141.0 61 100.0
Psat6g165920 Pisum sativum HOM05D002199 ORTHO05D004947 7.6e-31 137.5 77 90.9
SMO356G0382 Selaginella moellendorffii HOM05D002199 ORTHO05D004947 1.1e-29 133.7 66 90.9
Cre06.g251300 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D004947 3.2e-29 132.1 95 65.3
CARHR196040 Cardamine hirsuta HOM05D002199 ORTHO05D004947 3.5e-28 128.6 81 75.3
PRCOL_00007270 Prasinoderma coloniale HOM05D002199 ORTHO05D004947 4.6e-28 128.3 70 75.7
Migut.D00124 Erythranthe guttata HOM05D002199 ORTHO05D004947 6.0e-28 127.9 61 93.4
Medtr1g088710 Medicago truncatula HOM05D002199 ORTHO05D004947 6.6e-27 124.4 94 63.8
arahy.Tifrunner.gnm1.ann1.46M2KL Arachis hypogaea HOM05D002199 ORTHO05D004947 1.1e-24 117.1 62 91.9
Rhsim01G0284100 Rhododendron simsii HOM05D002199 ORTHO05D004947 2.4e-24 115.9 64 90.6
PGSC0003DMG400007541 Solanum tuberosum HOM05D002199 ORTHO05D004947 3.1e-24 115.5 54 92.6
Aa31LG11G9470 Aethionema arabicum HOM05D002199 ORTHO05D004947 2.3e-19 99.4 61 68.9
TPR.G291 Trifolium pratense HOM05D002199 ORTHO05D004947 2.1e-17 92.8 58 72.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.8e-16 89.7 39 97.4
Solyc09g065940.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 5.8e-15 84.7 40 97.5
C05p43680 Brassica napus HOM05D002199 ORTHO05D004947 4.9e-14 81.6 50 76.0
Pp3c1_35400 Physcomitrium patens HOM05D002199 ORTHO05D004947 2.7e-12 75.9 34 94.1
CSS0025289 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.1e-11 71.6 31 96.8
CSS0027607 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.1e-11 71.6 31 96.8
CSS0046314 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.1e-11 71.6 31 96.8
CSS0044065 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 6.7e-11 71.2 31 93.5
Sopen00g013590 Solanum pennellii HOM05D002199 ORTHO05D004947 2.1e-09 66.2 28 96.4
Sabra16G0270300 Salix brachista HOM05D001640 ORTHO05D004947 1.1e-08 63.9 27 96.3
RcHm_v2.0_Chr3g0494651 Rosa chinensis HOM05D002199 ORTHO05D004947 6.9e-08 61.2 41 63.4
CBR_g39570 Chara braunii HOM05D003070 ORTHO05D003567 6.5e-06 54.7 57 42.1


User provided reference genes

Program Settings