Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.88 Carica papaya HOM05D005106 ORTHO05D006224 2.7e-90 335.5 190 100.0
Gohir.D02G177800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 2.9e-28 129.4 107 75.7
Gorai.005G199600 Gossypium raimondii HOM05D005106 ORTHO05D006224 3.8e-28 129.0 110 67.3
Lj3g0003979 Lotus japonicus HOM05D005106 ORTHO05D006224 8.4e-28 127.9 107 72.0
Thecc.02G185300 Theobroma cacao HOM05D005106 ORTHO05D006224 9.3e-27 124.4 109 67.0
Dinv21367 Davidia involucrata HOM05D005106 ORTHO05D006224 1.6e-26 123.6 107 73.8
Duzib132G0108 Durio zibethinus HOM05D005106 ORTHO05D006224 6.1e-26 121.7 106 73.6
Nn1g06427 Nelumbo nucifera HOM05D005106 ORTHO05D006224 6.1e-26 121.7 109 70.6
CiPaw.03G180900 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.0e-25 120.9 107 68.2
Medtr2g090655 Medicago truncatula HOM05D005106 ORTHO05D006224 1.8e-25 120.2 120 57.5
CANSAT64G0803 Cannabis sativa HOM05D005106 ORTHO05D006224 1.1e-24 117.5 107 61.7
CsaV3_4G010150 Cucumis sativus L. HOM05D005106 ORTHO05D006224 1.1e-24 117.5 107 73.8
Gohir.A03G154800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 1.9e-24 116.7 107 72.0
Eucgr.K01050 Eucalyptus grandis HOM05D005106 ORTHO05D006224 3.3e-24 115.9 107 60.7
MELO3C026304.2 Cucumis melo HOM05D005106 ORTHO05D006224 2.8e-23 112.8 108 75.0
MSTRG.25482 Avicennia marina HOM05D005106 ORTHO05D006224 1.1e-22 110.9 109 59.6
CSS0035973 Camellia sinensis var. sinensis HOM05D005106 ORTHO05D006224 1.8e-22 110.2 107 72.0
Ciclev10016365m.g Citrus clementina HOM05D005106 ORTHO05D006224 2.4e-22 109.8 107 69.2
FAN02G3272 Fragaria x ananassa HOM05D005106 ORTHO05D006224 4.1e-22 109.0 110 60.0
Actinidia06452 Actinidia chinensis HOM05D005106 ORTHO05D006224 5.3e-22 108.6 107 60.7
ClCG02G009520 Citrullus lanatus HOM05D005106 ORTHO05D006224 5.3e-22 108.6 108 63.0
FAN05G0301 Fragaria x ananassa HOM05D005106 ORTHO05D006224 6.9e-22 108.2 110 59.1
FAN09G4502 Fragaria x ananassa HOM05D005106 ORTHO05D006224 2.0e-21 106.7 108 59.3
GSVIVG01020600001 Vitis vinifera HOM05D005106 ORTHO05D006224 7.7e-21 104.8 109 66.1
Duzib052G0667 Durio zibethinus HOM05D005106 ORTHO05D006224 5.0e-20 102.1 106 68.9
Duzib132G0012 Durio zibethinus HOM05D005106 ORTHO05D006224 5.0e-20 102.1 94 71.3
PGR142G3950 Punica granatum HOM05D005106 ORTHO05D006224 8.5e-20 101.3 106 67.0
Actinidia22276 Actinidia chinensis HOM05D005106 ORTHO05D006224 1.4e-19 100.5 108 52.8
Sc04g0004790 Simmondsia chinensis HOM05D005106 ORTHO05D006224 4.2e-19 99.0 110 54.5
THA.LOC104801162 Tarenaya hassleriana HOM05D005106 ORTHO05D006224 4.2e-19 99.0 93 71.0
Migut.C01328 Erythranthe guttata HOM05D005106 ORTHO05D006224 7.2e-19 98.2 107 57.0
Sed0010388 Sechium edule HOM05D005106 ORTHO05D006224 7.2e-19 98.2 108 63.9
Cc10_g09480 Coffea canephora HOM05D005106 ORTHO05D006224 9.4e-19 97.8 112 58.0
Glyma.12G206400 Glycine max HOM05D005106 ORTHO05D006224 9.4e-19 97.8 107 65.4
Potri.007G137400 Populus trichocarpa HOM05D005106 ORTHO05D006224 1.2e-18 97.4 111 54.1
Psat5g273600 Pisum sativum HOM05D005106 ORTHO05D006224 1.6e-18 97.1 113 69.0
Nitab4.5_0002677g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 2.7e-18 96.3 108 50.9
Carub.0008s0432 Capsella rubella HOM05D005106 ORTHO05D006224 3.6e-18 95.9 108 51.9
Manes.13G142600 Manihot esculenta HOM05D005106 ORTHO05D006224 6.1e-18 95.1 109 67.0
TWI23G0861 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 1.0e-17 94.4 107 64.5
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 1.4e-17 94.0 109 63.3
COL.COLO4_18047 Corchorus olitorius HOM05D005106 ORTHO05D006224 3.9e-17 92.4 71 76.1
Thhalv10003260m.g Eutrema salsugineum HOM05D005106 ORTHO05D006224 3.9e-17 92.4 110 57.3
Glyma.13G294500 Glycine max HOM05D005106 ORTHO05D006224 1.5e-16 90.5 108 66.7
SGA_v2.0_scaffold118G32565 Striga asiatica HOM05D005106 ORTHO05D006224 3.3e-16 89.4 120 44.2
CiPaw.04G128700 Carya illinoinensis HOM05D005106 ORTHO05D006224 7.4e-16 88.2 107 50.5
PSO541G1716 Papaver somniferum HOM05D005106 ORTHO05D006224 7.4e-16 88.2 115 58.3
TWI59G0090 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 9.7e-16 87.8 117 56.4
Sc21g0003220 Simmondsia chinensis HOM05D005106 ORTHO05D006224 1.3e-15 87.4 116 50.0
unitig_37.g13100 Utricularia gibba HOM05D005106 ORTHO05D006224 1.3e-15 87.4 107 51.4
PSO675G4288 Papaver somniferum HOM05D005106 ORTHO05D006224 1.7e-15 87.0 117 48.7
MD17G1234600 Malus domestica HOM05D005106 ORTHO05D006224 2.2e-15 86.7 106 55.7
TAR627G0282 Trochodendron aralioides HOM05D005106 ORTHO05D006224 2.2e-15 86.7 109 58.7
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 2.8e-15 86.3 105 52.4
Potri.017G014600 Populus trichocarpa HOM05D005106 ORTHO05D006224 3.7e-15 85.9 108 55.6
VMungo1080G0911 Vigna mungo HOM05D005106 ORTHO05D006224 3.7e-15 85.9 110 59.1
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 8.2e-15 84.7 116 53.4
EL10As7g23802 Beta vulgaris HOM05D005106 ORTHO05D006224 4.1e-14 82.4 107 58.9
TPR.G6465 Trifolium pratense HOM05D005106 ORTHO05D006224 4.1e-14 82.4 113 62.8
FvH4_6g26630 Fragaria vesca HOM05D005106 ORTHO05D006224 5.3e-14 82.0 107 56.1
DCAR_018109 Daucus carota HOM05D005106 ORTHO05D006224 1.5e-13 80.5 120 55.0
AUR62016818 Chenopodium quinoa HOM05D005106 ORTHO05D006224 2.6e-13 79.7 108 47.2
Lj7A285G44 Lonicera japonica HOM05D005106 ORTHO05D006224 3.4e-13 79.3 73 67.1
Nitab4.5_0005272g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 3.4e-13 79.3 119 41.2
AUR62010400 Chenopodium quinoa HOM05D005106 ORTHO05D006224 4.5e-13 79.0 107 46.7
Prupe.3G134700 Prunus persica HOM05D005106 ORTHO05D006224 4.5e-13 79.0 106 52.8
Peaxi162Scf00688g00358 Petunia axillaris HOM05D005106 ORTHO05D006224 1.3e-12 77.4 129 44.2
RcHm_v2.0_Chr2g0127341 Rosa chinensis HOM05D005106 ORTHO05D006224 3.8e-12 75.9 83 53.0
arahy.Tifrunner.gnm1.ann1.RWFH5R Arachis hypogaea HOM05D005106 ORTHO05D006224 6.5e-12 75.1 109 61.5
Phvul.005G100900 Phaseolus vulgaris HOM05D005106 ORTHO05D006224 6.5e-12 75.1 110 55.5
Zm00001eb184540 Zea mays HOM05D005106 ORTHO05D006224 6.5e-12 75.1 108 49.1
arahy.Tifrunner.gnm1.ann1.UE89WV Arachis hypogaea HOM05D005106 ORTHO05D006224 3.2e-11 72.8 109 62.4
Solyc02g062620.3 Solanum lycopersicum HOM05D005106 ORTHO05D006224 9.4e-11 71.2 123 48.0
Nitab4.5_0000016g0650 Nicotiana tabacum HOM05D005106 ORTHO05D006224 2.7e-10 69.7 38 78.9
Zm00001eb246940 Zea mays HOM05D005106 ORTHO05D006224 3.6e-10 69.3 108 47.2
Atru.chr6.2876 Acer truncatum HOM05D005106 ORTHO05D006224 1.0e-09 67.8 108 59.3
Aqoxy1G02310 Aquilegia oxysepala HOM05D005106 ORTHO05D006224 1.0e-09 67.8 116 49.1
Nitab4.5_0000061g0200 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.0e-09 67.8 122 45.9
Ah.11g045690 Amaranthus hybridus HOM05D005106 ORTHO05D006224 1.8e-09 67.0 70 51.4
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 3.9e-09 65.9 102 47.1
Os02g0612300 Oryza sativa ssp. japonica HOM05D005106 ORTHO05D006224 2.6e-08 63.2 107 43.0
Sc04g0004750 Simmondsia chinensis HOM05D005106 ORTHO05D006224 2.6e-08 63.2 39 74.4
AUR62010422 Chenopodium quinoa HOM05D005106 ORTHO05D006224 3.3e-08 62.8 70 50.0
Sp2g09020 Schrenkiella parvula HOM05D005106 ORTHO05D006224 9.7e-08 61.2 111 56.8
CARHR179060 Cardamine hirsuta HOM05D005106 ORTHO05D006224 2.8e-07 59.7 110 55.5
AT5G44200 Arabidopsis thaliana HOM05D005106 ORTHO05D006224 3.7e-07 59.3 110 51.8
Aa31LG5G3040 Aethionema arabicum HOM05D005106 ORTHO05D006224 5.3e-06 55.5 111 57.7
AL8G15820 Arabidopsis lyrata HOM05D005106 ORTHO05D006224 9.1e-06 54.7 111 55.0


User provided reference genes

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