Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc74.26 Carica papaya HOM05D000329 ORTHO05D000833 8.5e-148 526.9 259 100.0
TAR636G0175 Trochodendron aralioides HOM05D000329 ORTHO05D000833 2.7e-24 116.7 144 44.4
QL12p033243 Quercus lobata HOM05D000329 ORTHO05D000833 1.0e-23 114.8 186 41.9
QL12p034051 Quercus lobata HOM05D000329 ORTHO05D000833 1.0e-23 114.8 186 41.9
Manes.01G061050 Manihot esculenta HOM05D000329 ORTHO05D000833 3.8e-23 112.8 141 44.7
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 3.8e-23 112.8 141 46.1
TWI81G0989 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 2.5e-22 110.2 142 43.0
Sabra03G0089600 Salix brachista HOM05D000329 ORTHO05D000833 5.5e-22 109.0 137 48.2
Cfa012174 Carpinus fangiana HOM05D000329 ORTHO05D000833 4.7e-21 105.9 141 43.3
GSVIVG01019761001 Vitis vinifera HOM05D000329 ORTHO05D000833 4.7e-21 105.9 141 43.3
CiPaw.12G093800 Carya illinoinensis HOM05D000329 ORTHO05D000833 8.0e-21 105.1 141 43.3
MD06G1081900 Malus domestica HOM05D000329 ORTHO05D000833 1.0e-20 104.8 142 40.8
Atru.chr9.2239 Acer truncatum HOM05D000329 ORTHO05D000833 2.3e-20 103.6 141 41.1
Atru.chr9.2249 Acer truncatum HOM05D000329 ORTHO05D000833 2.3e-20 103.6 141 41.1
vmacro11324 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 2.3e-20 103.6 144 39.6
Rhsim02G0228800 Rhododendron simsii HOM05D000329 ORTHO05D000833 5.2e-20 102.4 141 41.1
COL.COLO4_34455 Corchorus olitorius HOM05D000329 ORTHO05D000833 8.8e-20 101.7 146 42.5
Cc08_g14660 Coffea canephora HOM05D000329 ORTHO05D000833 1.2e-19 101.3 136 41.9
Lj2A191G51 Lonicera japonica HOM05D000329 ORTHO05D000833 1.5e-19 100.9 141 41.8
MBI17_g28345_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 3.4e-19 99.8 141 40.4
MD14G1103700 Malus domestica HOM05D000329 ORTHO05D000833 7.5e-19 98.6 141 38.3
Actinidia02012 Actinidia chinensis HOM05D000329 ORTHO05D000833 1.3e-18 97.8 141 39.7
Actinidia14555 Actinidia chinensis HOM05D000329 ORTHO05D000833 1.3e-18 97.8 141 39.7
CSS0031193 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D000833 2.2e-18 97.1 141 39.0
Hund14803 Selenicereus undatus HOM05D000329 ORTHO05D000833 2.2e-18 97.1 137 43.1
Gorai.004G211700 Gossypium raimondii HOM05D000329 ORTHO05D000833 6.3e-18 95.5 147 42.2
Nitab4.5_0003441g0110 Nicotiana tabacum HOM05D000329 ORTHO05D000833 6.3e-18 95.5 136 42.6
Prupe.5G099000 Prunus persica HOM05D000329 ORTHO05D000833 8.3e-18 95.1 141 37.6
Sed0005725 Sechium edule HOM05D000329 ORTHO05D000833 8.3e-18 95.1 141 36.9
Gohir.A08G182350 Gossypium hirsutum HOM05D000329 ORTHO05D000833 1.1e-17 94.7 147 42.2
Gohir.D08G200900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 1.1e-17 94.7 147 42.2
Thecc.03G277900 Theobroma cacao HOM05D000329 ORTHO05D000833 1.1e-17 94.7 238 32.8
Sopen08g029320 Solanum pennellii HOM05D000329 ORTHO05D000833 1.4e-17 94.4 136 41.2
Nitab4.5_0010612g0010 Nicotiana tabacum HOM05D000329 ORTHO05D000833 2.4e-17 93.6 136 41.9
Solyc08g081000.3 Solanum lycopersicum HOM05D000329 ORTHO05D000833 2.4e-17 93.6 136 41.2
PGSC0003DMG400012211 Solanum tuberosum HOM05D000329 ORTHO05D000833 3.1e-17 93.2 136 41.2
Ciclev10018462m.g Citrus clementina HOM05D000329 ORTHO05D000833 9.1e-17 91.7 141 38.3
Nn1g01495 Nelumbo nucifera HOM05D000329 ORTHO05D000833 1.2e-16 91.3 142 36.6
CAN.G774.26 Capsicum annuum HOM05D000329 ORTHO05D000833 1.6e-16 90.9 136 41.2
FvH4_5g02310 Fragaria vesca HOM05D000329 ORTHO05D000833 1.6e-16 90.9 141 37.6
FAN18G0976 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.6e-16 90.9 141 37.6
arahy.Tifrunner.gnm1.ann1.6V6FMV Arachis hypogaea HOM05D000329 ORTHO05D000833 2.0e-16 90.5 137 38.7
LjContig00312_ERROPOS870357g0009147 Lotus japonicus HOM05D000329 ORTHO05D000833 2.0e-16 90.5 192 33.3
Sc01g0009540 Simmondsia chinensis HOM05D000329 ORTHO05D000833 2.7e-16 90.1 135 40.7
AUR62017213 Chenopodium quinoa HOM05D000329 ORTHO05D000833 3.5e-16 89.7 137 40.1
MSTRG.13841 Avicennia marina HOM05D000329 ORTHO05D000833 4.5e-16 89.4 135 39.3
Peaxi162Scf00119g00838 Petunia axillaris HOM05D000329 ORTHO05D000833 4.5e-16 89.4 128 44.5
QL12p034092 Quercus lobata HOM05D000329 ORTHO05D000833 4.5e-16 89.4 170 39.4
RcHm_v2.0_Chr7g0197841 Rosa chinensis HOM05D000329 ORTHO05D000833 4.5e-16 89.4 141 36.9
arahy.Tifrunner.gnm1.ann1.AJP7R9 Arachis hypogaea HOM05D000329 ORTHO05D000833 7.7e-16 88.6 137 38.0
EL10Ac5g13077 Beta vulgaris HOM05D000329 ORTHO05D000833 1.0e-15 88.2 136 38.2
Haze_08848 Corylus avellana HOM05D000329 ORTHO05D000833 1.0e-15 88.2 142 38.7
Lalb_Chr09g0321021 Lupinus albus HOM05D000329 ORTHO05D000833 1.0e-15 88.2 141 38.3
FAN08G1575 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.3e-15 87.8 141 36.9
Phvul.002G157500 Phaseolus vulgaris HOM05D000329 ORTHO05D000833 1.7e-15 87.4 141 35.5
Lsat_1_v5_gn_3_7360 Lactuca sativa HOM05D000329 ORTHO05D000833 2.3e-15 87.0 119 45.4
AUR62010670 Chenopodium quinoa HOM05D000329 ORTHO05D000833 2.9e-15 86.7 137 39.4
Migut.E01096 Erythranthe guttata HOM05D000329 ORTHO05D000833 2.9e-15 86.7 135 37.8
SGA_v2.0_scaffold144G35947 Striga asiatica HOM05D000329 ORTHO05D000833 5.0e-15 85.9 173 34.7
FAN13G2110 Fragaria x ananassa HOM05D000329 ORTHO05D000833 8.6e-15 85.1 141 35.5
DCAR_006743 Daucus carota HOM05D000329 ORTHO05D000833 1.1e-14 84.7 141 36.2
THA.LOC104818027 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 1.1e-14 84.7 142 36.6
Aqoxy5G04007 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 1.5e-14 84.3 142 37.3
Eucgr.D01851 Eucalyptus grandis HOM05D000329 ORTHO05D000833 1.5e-14 84.3 141 36.9
FAN04G0379 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.9e-14 84.0 141 36.2
Duzib068G0085 Durio zibethinus HOM05D000329 ORTHO05D000833 2.5e-14 83.6 147 40.1
Psat2g182320 Pisum sativum HOM05D000329 ORTHO05D000833 2.5e-14 83.6 141 34.8
PSO210G7657 Papaver somniferum HOM05D000329 ORTHO05D000833 5.5e-14 82.4 142 33.8
TPR.G6625 Trifolium pratense HOM05D000329 ORTHO05D000833 5.5e-14 82.4 141 34.0
HanXRQChr17g0533711 Helianthus annuus HOM05D000329 ORTHO05D000833 9.5e-14 81.6 144 38.2
Glyma.01G219800 Glycine max HOM05D000329 ORTHO05D000833 1.2e-13 81.3 141 36.9
Glyma.11G023700 Glycine max HOM05D000329 ORTHO05D000833 1.6e-13 80.9 141 36.9
ClCG01G002770 Citrullus lanatus HOM05D000329 ORTHO05D000833 6.1e-13 79.0 141 33.3
Medtr5g010300 Medicago truncatula HOM05D000329 ORTHO05D000833 8.0e-13 78.6 141 32.6
VMungo1215G1167 Vigna mungo HOM05D000329 ORTHO05D000833 8.0e-13 78.6 141 33.3
PGR031G0355 Punica granatum HOM05D000329 ORTHO05D000833 1.8e-12 77.4 136 34.6
CsaV3_5G002860 Cucumis sativus L. HOM05D000329 ORTHO05D000833 6.8e-12 75.5 141 31.2
ECA246G1250 Erigeron canadensis HOM05D000329 ORTHO05D000833 5.7e-11 72.4 136 34.6
QL12p033457 Quercus lobata HOM05D000005 ORTHO05D000012 9.8e-11 71.6 82 46.3
QL12p033493 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-10 70.1 79 48.1
ATR0680G104 Amborella trichopoda HOM05D000329 ORTHO05D000833 4.9e-10 69.3 141 31.2
DCAR_017358 Daucus carota HOM05D000329 ORTHO05D000833 8.3e-10 68.6 124 34.7
MELO3C005670.2 Cucumis melo HOM05D000329 ORTHO05D000833 7.0e-09 65.5 144 29.2
QL12p033282 Quercus lobata HOM05D000005 ORTHO05D000012 7.0e-09 65.5 81 45.7
QL12p034180 Quercus lobata HOM05D000005 ORTHO05D000012 4.5e-08 62.8 81 44.4


User provided reference genes

Program Settings