Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 4.4e-210 734.6 425 100.0
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 4.2e-176 621.7 422 86.0
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 3.1e-171 605.5 422 81.8
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 4.0e-171 605.1 424 83.7
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 4.0e-171 605.1 422 82.5
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 2.2e-169 599.4 423 85.8
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 3.8e-169 598.6 422 82.5
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 6.4e-169 597.8 423 83.7
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.1e-168 597.0 422 82.9
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.4e-168 596.7 427 78.5
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.4e-168 595.9 422 83.6
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.2e-167 593.6 422 81.0
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 2.1e-167 592.8 422 83.6
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.7e-167 592.4 423 83.5
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.5e-167 592.0 427 83.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.5e-167 592.0 423 83.5
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.6e-167 591.7 423 83.5
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.3e-166 589.3 423 78.3
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 6.7e-166 587.8 422 82.9
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.3e-165 585.1 422 80.1
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 5.6e-165 584.7 422 83.2
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 9.6e-165 583.9 423 83.7
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.3e-164 583.6 422 82.2
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.4e-163 580.1 421 82.4
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.4e-163 580.1 422 81.8
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.4e-163 580.1 424 79.2
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 5.3e-163 578.2 425 78.4
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.5e-162 575.1 420 80.7
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 7.6e-162 574.3 422 80.8
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 1.7e-161 573.2 423 81.6
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.9e-161 572.4 421 74.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.8e-161 572.0 427 79.9
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.1e-160 570.5 421 74.6
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.5e-160 569.3 425 80.9
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 4.2e-160 568.5 422 80.6
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.3e-160 567.4 429 75.1
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 2.7e-159 565.8 429 72.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 6.0e-159 564.7 427 76.6
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 6.0e-159 564.7 422 76.8
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-158 563.5 427 76.3
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.1e-158 561.6 427 76.8
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.1e-157 560.5 423 79.9
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.9e-157 559.7 421 72.4
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 2.5e-157 559.3 425 76.5
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 4.3e-157 558.5 422 80.1
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 2.2e-156 556.2 421 74.6
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.8e-156 555.8 423 77.8
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 6.3e-156 554.7 421 73.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.1e-155 552.0 423 79.2
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 9.0e-155 550.8 423 75.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.6e-154 549.3 422 76.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 4.5e-154 548.5 421 79.8
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-153 547.0 427 74.9
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 1.4e-152 543.5 424 79.0
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.6e-151 538.5 423 74.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 6.1e-151 538.1 420 78.3
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.0e-150 537.3 403 79.4
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 4.3e-149 531.9 426 72.5
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 9.7e-149 530.8 428 71.3
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.2e-148 529.6 424 77.4
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 3.7e-148 528.9 422 71.1
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-145 519.6 422 68.0
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.4e-144 516.9 426 73.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.0e-142 510.8 401 72.8
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 1.3e-140 503.8 330 79.4
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.2e-140 503.1 330 78.8
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 6.3e-140 501.5 402 69.2
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.4e-139 499.6 426 64.6
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.1e-139 499.2 425 72.2
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 9.1e-139 497.7 426 63.8
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.7e-137 493.4 434 65.2
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.9e-137 492.7 320 79.4
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.0e-137 491.9 425 69.2
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 6.5e-137 491.5 321 79.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 6.5e-137 491.5 401 71.8
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.5e-136 489.6 427 64.6
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 7.2e-136 488.0 435 64.8
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-135 486.9 425 71.1
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.7e-135 486.1 443 69.1
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 8.0e-135 484.6 428 70.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.4e-134 483.8 393 75.1
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.9e-134 482.3 426 62.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.7e-134 481.5 434 69.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 5.7e-133 478.4 328 77.7
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 5.7e-133 478.4 328 77.7
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 9.7e-133 477.6 328 77.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.2e-132 476.5 429 70.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.8e-131 473.4 419 62.3
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.1e-131 472.6 328 77.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 3.5e-130 469.2 441 65.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 3.2e-128 462.6 421 62.0
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.6e-127 459.1 403 64.8
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.8e-126 456.8 426 63.1
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 2.3e-126 456.4 429 58.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 8.8e-126 454.5 404 63.4
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.6e-125 453.0 420 60.2
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 2.8e-124 449.5 421 60.8
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 8.2e-124 448.0 426 58.2
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.8e-123 446.8 421 61.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.1e-123 445.7 439 63.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.2e-122 444.1 398 61.3
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-112 411.0 382 60.7
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 4.7e-111 405.6 402 56.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.3e-110 403.3 382 59.2
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.2e-108 396.7 425 54.8
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 2.1e-103 380.2 223 86.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 6.8e-102 375.2 410 57.8
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.2e-101 374.4 456 57.7
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 5.8e-101 372.1 292 71.6
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.3e-97 360.9 430 52.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 6.2e-95 352.1 446 54.3
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.4e-91 339.0 292 65.1
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.3e-88 329.7 286 75.9
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 3.1e-86 323.2 270 63.3
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 1.5e-77 294.3 160 92.5
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 2.0e-77 293.9 357 51.3
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 9.9e-77 291.6 289 60.2
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.8e-76 289.7 346 50.3
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 7.1e-75 285.4 142 100.0
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 2.7e-74 283.5 171 83.6
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 5.3e-70 269.2 239 60.7
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.9e-59 234.2 156 73.7
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 2.5e-56 223.8 115 94.8
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.9e-52 210.3 168 64.3
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.2e-45 188.3 119 81.5
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.7e-44 184.5 159 61.0
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 2.9e-44 183.7 128 74.2
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-41 174.5 288 42.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 2.2e-39 167.5 156 51.3
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 3.7e-39 166.8 261 42.9
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.5e-35 154.1 426 33.3
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.0e-28 132.1 116 61.2
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.2e-28 131.0 64 96.9
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.0e-28 129.8 171 48.5
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.5e-28 129.4 64 95.3
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.5e-28 129.4 64 95.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.2e-27 127.1 64 93.8
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 7.9e-26 122.5 171 46.2
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 3.9e-25 120.2 79 74.7
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 7.4e-24 115.9 68 82.4
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 9.7e-24 115.5 141 61.0
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.8e-23 114.0 97 61.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.4e-22 111.7 66 80.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.8e-22 111.3 68 79.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.5e-21 106.7 163 45.4
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.6e-18 97.1 108 52.8
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 5.5e-11 73.2 69 55.1
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 5.5e-11 73.2 69 55.1
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 6.1e-10 69.7 49 77.6
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 2.4e-06 57.8 35 74.3


User provided reference genes

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