Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.164 Carica papaya HOM05D003944 ORTHO05D018516 7.5e-127 457.2 233 100.0
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 9.6e-74 280.8 235 69.8
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 6.9e-72 274.6 238 67.6
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 4.2e-69 265.4 234 66.2
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 2.1e-68 263.1 246 65.9
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 2.7e-68 262.7 240 63.3
CARHR209140 Cardamine hirsuta HOM05D003944 ORTHO05D005521 3.5e-68 262.3 241 64.3
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 1.3e-67 260.4 234 65.0
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 2.3e-67 259.6 242 66.5
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 3.0e-67 259.2 241 63.9
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 3.9e-67 258.8 235 66.8
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 6.6e-67 258.1 235 65.1
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 6.6e-67 258.1 234 64.5
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 6.6e-67 258.1 233 64.8
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 8.7e-67 257.7 240 64.6
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 1.1e-66 257.3 245 61.6
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 1.1e-66 257.3 241 62.2
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 1.1e-66 257.3 260 60.8
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 1.1e-66 257.3 240 65.4
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 1.9e-66 256.5 240 63.3
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 2.5e-66 256.1 236 61.9
Sc13g0001110 Simmondsia chinensis HOM05D003944 ORTHO05D005521 3.3e-66 255.8 242 64.5
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 3.3e-66 255.8 238 65.1
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 4.3e-66 255.4 241 64.7
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 5.6e-66 255.0 238 65.5
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 7.3e-66 254.6 236 63.1
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 7.3e-66 254.6 232 62.9
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 7.3e-66 254.6 241 64.3
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 9.6e-66 254.2 240 62.5
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 1.6e-65 253.4 242 64.9
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 1.6e-65 253.4 242 61.6
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 1.6e-65 253.4 211 66.4
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 2.1e-65 253.1 243 62.1
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 2.8e-65 252.7 235 64.3
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 3.6e-65 252.3 207 70.0
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 3.6e-65 252.3 242 63.2
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 3.6e-65 252.3 241 62.7
Nitab4.5_0004224g0030 Nicotiana tabacum HOM05D003944 ORTHO05D005521 3.6e-65 252.3 239 63.2
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 3.6e-65 252.3 241 63.1
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 6.2e-65 251.5 236 60.6
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 6.2e-65 251.5 247 62.8
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 6.2e-65 251.5 239 62.8
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 1.1e-64 250.8 206 68.4
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 1.4e-64 250.4 234 62.8
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 1.4e-64 250.4 245 61.2
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 1.4e-64 250.4 225 64.4
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 1.8e-64 250.0 245 64.1
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 2.4e-64 249.6 246 59.8
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 3.1e-64 249.2 232 62.5
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 5.3e-64 248.4 226 65.0
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 5.3e-64 248.4 242 59.1
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 5.3e-64 248.4 239 60.3
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 6.9e-64 248.1 206 67.5
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 1.5e-63 246.9 219 65.8
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 2.0e-63 246.5 232 61.2
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 2.0e-63 246.5 173 74.6
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 2.0e-63 246.5 236 61.0
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 2.0e-63 246.5 234 62.4
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 2.6e-63 246.1 241 61.4
Sabra06G0026400 Salix brachista HOM05D001103 ORTHO05D000954 3.4e-63 245.7 182 71.4
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 3.4e-63 245.7 218 64.7
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 4.5e-63 245.4 219 66.2
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 5.8e-63 245.0 243 59.7
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 7.6e-63 244.6 244 59.8
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 7.6e-63 244.6 235 63.0
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 9.9e-63 244.2 228 61.0
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 9.9e-63 244.2 168 75.6
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 2.2e-62 243.0 239 61.5
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 2.9e-62 242.7 224 62.5
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 2.9e-62 242.7 209 62.7
HPP92_028465 Vanilla planifolia HOM05D003944 ORTHO05D005521 2.9e-62 242.7 239 59.4
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 4.9e-62 241.9 238 60.9
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 6.4e-62 241.5 239 60.7
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 8.4e-62 241.1 241 59.8
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 1.4e-61 240.4 204 64.7
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 1.4e-61 240.4 244 58.2
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 1.9e-61 240.0 230 61.3
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 2.4e-61 239.6 241 58.9
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 3.2e-61 239.2 241 58.1
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 4.2e-61 238.8 176 70.5
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 4.2e-61 238.8 165 75.2
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 7.1e-61 238.0 169 72.8
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 7.1e-61 238.0 242 59.1
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 7.1e-61 238.0 244 58.2
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 9.3e-61 237.7 245 57.6
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 9.3e-61 237.7 239 59.0
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 1.2e-60 237.3 241 60.6
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 1.2e-60 237.3 241 60.6
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 1.6e-60 236.9 223 63.2
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 2.1e-60 236.5 241 59.3
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 2.7e-60 236.1 237 60.3
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 2.7e-60 236.1 176 71.0
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 2.7e-60 236.1 221 61.1
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 4.6e-60 235.3 232 60.3
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 6.0e-60 235.0 167 73.1
BraA03t09530Z Brassica rapa HOM05D003944 ORTHO05D005521 7.9e-60 234.6 176 70.5
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 1.0e-59 234.2 238 59.7
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 1.0e-59 234.2 165 74.5
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 2.3e-59 233.0 221 61.1
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 2.3e-59 233.0 242 59.5
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 3.0e-59 232.6 246 59.3
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 1.5e-58 230.3 236 57.6
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 6.2e-57 224.9 254 57.5
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 1.8e-56 223.4 173 67.6
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 1.8e-56 223.4 173 67.6
BraA05t22675Z Brassica rapa HOM05D003944 ORTHO05D005521 1.8e-56 223.4 173 67.6
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 4.0e-56 222.2 232 56.0
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 5.3e-56 221.9 169 68.0
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 6.9e-56 221.5 235 54.9
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 9.0e-56 221.1 192 62.5
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 2.0e-55 219.9 226 57.5
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 1.3e-54 217.2 227 58.1
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 8.4e-54 214.5 228 57.0
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 2.7e-52 209.5 240 53.8
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 3.0e-51 206.1 168 64.9
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 5.1e-51 205.3 235 51.9
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 1.1e-50 204.1 168 64.3
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 3.3e-50 202.6 141 74.5
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 3.3e-50 202.6 245 51.4
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 7.4e-50 201.4 142 73.9
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 9.6e-50 201.1 154 69.5
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 1.3e-49 200.7 224 54.9
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 6.2e-49 198.4 148 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 2.6e-47 193.0 140 70.0
SEGI_14179 Sequoiadendron giganteum HOM05D003944 ORTHO05D018516 1.9e-45 186.8 168 61.3
Cre10.g440750 Chlamydomonas reinhardtii HOM05D003944 ORTHO05D005521 1.8e-43 180.3 147 64.6
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 8.7e-43 177.9 213 52.6
MCO09G035 Micromonas commoda HOM05D003944 ORTHO05D005521 1.5e-42 177.2 150 60.0
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 7.4e-42 174.9 206 55.3
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 3.1e-40 169.5 165 61.2
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 9.0e-40 167.9 170 60.6
HanXRQChr12g0369811 Helianthus annuus HOM05D003944 ORTHO05D018516 7.6e-39 164.9 134 64.9
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 1.1e-34 151.0 127 62.2
HPP92_006582 Vanilla planifolia HOM05D003944 ORTHO05D018516 3.6e-28 129.4 160 50.6
arahy.Tifrunner.gnm1.ann1.8LUP6T Arachis hypogaea HOM05D003944 ORTHO05D018516 1.3e-25 120.9 66 87.9
HanXRQChr14g0432561 Helianthus annuus HOM05D003944 ORTHO05D018516 5.7e-18 95.5 53 83.0
Haze_07892 Corylus avellana HOM05D003944 ORTHO05D164236 1.8e-16 90.5 77 66.2
arahy.Tifrunner.gnm1.ann1.7H6MCI Arachis hypogaea HOM05D001259 ORTHO05D001103 1.1e-13 81.3 51 76.5
arahy.Tifrunner.gnm1.ann1.HHLG0V Arachis hypogaea HOM05D001259 ORTHO05D001103 1.1e-13 81.3 51 76.5
Gohir.A13G076800 Gossypium hirsutum HOM05D003944 ORTHO05D018516 2.2e-09 67.0 68 55.9
Gohir.A11G322000 Gossypium hirsutum HOM05D003944 ORTHO05D018516 1.6e-07 60.8 39 82.1


User provided reference genes

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