Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.92 Carica papaya HOM05D000399 ORTHO05D000304 2.9e-57 224.9 110 100.0
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 4.1e-27 124.8 94 58.5
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.2e-26 123.2 92 60.9
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 1.6e-26 122.9 96 58.3
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 1.6e-26 122.9 99 61.6
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 4.6e-26 121.3 96 60.4
CSS0049878 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.3e-25 119.8 92 59.8
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.6e-25 117.5 96 55.2
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.6e-25 117.1 95 57.9
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-24 116.7 92 57.6
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-24 116.7 92 57.6
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.1e-24 116.7 92 57.6
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.5e-24 116.3 98 55.1
QL02p091725 Quercus lobata HOM05D000399 ORTHO05D000304 2.5e-24 115.5 98 57.1
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 3.3e-24 115.2 96 58.3
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 5.6e-24 114.4 96 53.1
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.6e-23 112.8 96 51.0
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.6e-23 111.7 92 56.5
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 6.2e-23 110.9 96 52.1
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.2e-23 110.9 96 59.4
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 8.1e-23 110.5 102 52.0
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.4e-22 109.8 96 52.1
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.4e-22 109.8 94 57.4
TAR626G0573 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.4e-22 109.8 96 54.2
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.1e-22 108.6 96 50.0
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.1e-22 108.6 96 57.3
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.1e-22 108.6 96 57.3
ClCG06G012100 Citrullus lanatus HOM05D000399 ORTHO05D000304 4.0e-22 108.2 96 47.9
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.9e-22 107.1 101 46.5
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.2e-21 106.7 96 49.0
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-21 106.7 94 51.1
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-21 105.9 101 46.5
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-21 105.9 100 47.0
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.4e-21 105.1 103 53.4
FAN26G2901 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.4e-21 104.8 96 49.0
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 4.4e-21 104.8 96 52.1
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.2e-20 102.4 101 45.5
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.9e-20 101.3 95 50.5
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 4.9e-20 101.3 96 51.0
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.4e-19 99.0 96 49.0
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 3.2e-19 98.6 96 50.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 4.1e-19 98.2 94 45.7
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 4.1e-19 98.2 96 49.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 5.4e-19 97.8 92 46.7
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 5.4e-19 97.8 101 41.6
Ah.09g226560 Amaranthus hybridus HOM05D000399 ORTHO05D000304 9.2e-19 97.1 108 47.2
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.6e-18 96.3 96 47.9
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.6e-18 96.3 98 45.9
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 2.1e-18 95.9 96 47.9
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 2.1e-18 95.9 96 49.0
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 3.5e-18 95.1 96 47.9
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.0e-18 94.4 96 45.8
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 7.8e-18 94.0 96 45.8
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.8e-18 94.0 96 47.9
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.3e-17 93.2 96 45.8
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 2.3e-17 92.4 96 43.8
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 3.0e-17 92.0 96 47.9
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.9e-17 91.7 97 47.4
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 3.9e-17 91.7 98 43.9
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 3.9e-17 91.7 96 49.0
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 8.7e-17 90.5 93 51.6
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-16 90.1 92 50.0
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.1e-16 90.1 96 50.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.5e-16 89.7 94 45.7
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 1.5e-16 89.7 97 47.4
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.5e-16 89.7 97 47.4
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.9e-16 89.4 97 48.5
Ca_21628_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.9e-16 89.4 97 48.5
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 2.5e-16 89.0 92 48.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.5e-16 89.0 92 44.6
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.5e-16 89.0 97 44.3
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.3e-16 88.6 96 47.9
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 7.3e-16 87.4 100 41.0
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 9.6e-16 87.0 105 36.2
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 9.6e-16 87.0 100 40.0
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 9.6e-16 87.0 100 40.0
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 1.6e-15 86.3 97 48.5
Sc08g0005110 Simmondsia chinensis HOM05D000399 ORTHO05D000304 1.6e-15 86.3 95 45.3
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 2.8e-15 85.5 96 43.8
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 3.6e-15 85.1 100 39.0
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.6e-15 85.1 92 44.6
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.7e-15 84.7 96 44.8
MBI15_g29767_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 4.7e-15 84.7 92 43.5
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.1e-14 83.6 100 37.0
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 1.1e-14 83.6 95 48.4
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.4e-14 83.2 100 39.0
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.8e-14 82.8 103 38.8
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.8e-14 82.8 103 38.8
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.8e-14 82.8 100 37.0
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 4.0e-14 81.6 100 38.0
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 1.2e-13 80.1 96 44.8
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 9.9e-13 77.0 89 42.7
CDE08G1354 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.3e-12 76.6 96 40.6
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.9e-12 75.5 103 38.8
Psat2g104200 Pisum sativum HOM05D000399 ORTHO05D000304 1.2e-10 70.1 86 41.9
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 4.6e-10 68.2 94 39.4
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.6e-10 68.2 94 35.1
Haze_19296 Corylus avellana HOM05D000399 ORTHO05D000304 1.7e-09 66.2 77 48.1
COL.COLO4_18728 Corchorus olitorius HOM05D000399 ORTHO05D000304 1.1e-08 63.5 50 66.0
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.1e-06 55.5 94 36.2


User provided reference genes

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