Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc32.132 Carica papaya HOM05D003289 ORTHO05D004594 6.7e-162 573.9 285 100.0
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 4.4e-89 332.0 205 77.6
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 5.8e-89 331.6 180 86.7
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 7.5e-89 331.3 211 78.7
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.9e-88 329.3 180 86.1
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 3.7e-88 328.9 205 77.1
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 3.7e-88 328.9 254 65.7
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 3.7e-88 328.9 205 78.0
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 1.4e-87 327.0 180 85.6
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 1.4e-87 327.0 205 77.6
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 5.4e-87 325.1 199 77.9
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 5.4e-87 325.1 180 85.0
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 5.4e-87 325.1 205 78.0
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 7.1e-87 324.7 205 77.1
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 1.2e-86 323.9 205 75.6
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 1.6e-86 323.6 211 74.9
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 1.6e-86 323.6 206 76.7
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 2.7e-86 322.8 199 78.9
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 7.8e-86 321.2 180 84.4
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 1.0e-85 320.9 180 83.9
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 1.0e-85 320.9 205 76.1
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 2.3e-85 319.7 205 75.1
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 3.9e-85 318.9 180 82.2
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 5.1e-85 318.5 205 74.6
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 6.6e-85 318.2 180 83.3
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 6.6e-85 318.2 180 82.2
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 8.6e-85 317.8 173 85.0
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 1.5e-84 317.0 205 74.6
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 2.5e-84 316.2 180 82.2
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 5.6e-84 315.1 180 82.2
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 5.6e-84 315.1 205 73.7
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 5.6e-84 315.1 180 82.8
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 7.3e-84 314.7 205 74.6
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 7.3e-84 314.7 180 82.8
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 1.2e-83 313.9 205 75.1
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.2e-83 313.9 180 81.7
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.6e-83 313.5 180 81.7
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.1e-83 313.2 180 82.2
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 2.1e-83 313.2 180 82.2
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 3.6e-83 312.4 180 81.7
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.7e-83 312.0 180 81.1
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 6.2e-83 311.6 180 81.7
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 8.1e-83 311.2 206 74.8
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.1e-82 310.8 206 74.3
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 1.4e-82 310.5 205 73.7
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 1.4e-82 310.5 205 72.2
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.8e-82 310.1 206 74.8
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 2.4e-82 309.7 180 81.7
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 3.1e-82 309.3 205 72.7
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 3.1e-82 309.3 180 81.1
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 3.1e-82 309.3 173 83.8
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 3.1e-82 309.3 206 74.3
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 3.1e-82 309.3 205 73.7
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 4.0e-82 308.9 205 72.7
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 6.8e-82 308.1 206 73.8
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 8.9e-82 307.8 205 73.7
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 1.2e-81 307.4 180 80.0
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 2.0e-81 306.6 209 73.7
Ah.08g215940 Amaranthus hybridus HOM05D003289 ORTHO05D004594 2.6e-81 306.2 205 72.7
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 3.4e-81 305.8 205 71.2
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 4.4e-81 305.4 206 73.8
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 4.4e-81 305.4 206 73.8
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 4.4e-81 305.4 205 73.2
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 5.8e-81 305.1 205 70.7
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 9.9e-81 304.3 206 73.3
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 9.9e-81 304.3 215 71.2
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 1.3e-80 303.9 180 80.0
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.3e-80 303.9 209 73.2
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 1.3e-80 303.9 209 72.7
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 1.7e-80 303.5 205 70.2
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 2.9e-80 302.8 205 70.2
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 3.8e-80 302.4 180 80.0
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 4.9e-80 302.0 206 72.8
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 8.4e-80 301.2 205 69.3
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.4e-79 300.4 199 71.4
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 2.4e-79 299.7 237 62.4
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 5.4e-79 298.5 199 72.4
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 7.1e-79 298.1 206 71.4
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 3.5e-78 295.8 180 78.3
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 6.0e-78 295.0 186 75.3
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 1.0e-77 294.3 205 70.2
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.3e-77 293.1 206 71.4
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 3.0e-77 292.7 219 66.2
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.1e-76 290.8 206 70.4
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.5e-76 290.4 205 70.7
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 4.0e-74 282.3 212 65.6
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 3.8e-72 275.8 180 73.9
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 4.9e-72 275.4 180 72.8
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 3.5e-70 269.2 161 78.9
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 1.3e-69 267.3 181 70.2
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 3.0e-69 266.2 206 65.5
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 8.7e-69 264.6 206 67.5
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.1e-68 264.2 184 71.7
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 7.3e-68 261.5 205 62.4
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 2.1e-67 260.0 221 62.0
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 2.8e-67 259.6 238 59.7
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 1.2e-65 254.2 205 62.0
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 4.6e-62 242.3 205 60.5
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 6.7e-61 238.4 151 74.8
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 8.7e-61 238.0 205 61.0
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 4.3e-60 235.7 206 58.7
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 2.8e-59 233.0 154 72.1
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 4.2e-55 219.2 118 84.7
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 3.5e-54 216.1 184 59.2
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 7.9e-54 214.9 113 88.5
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 1.0e-53 214.5 151 66.2
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 1.8e-53 213.8 155 65.2
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.0e-53 213.0 151 65.6
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 3.0e-53 213.0 211 52.1
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 8.7e-53 211.5 151 64.9
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 3.3e-52 209.5 126 77.0
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 4.0e-50 202.6 172 55.2
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 2.9e-48 196.4 204 50.0
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 7.1e-47 191.8 198 51.5
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 2.2e-43 180.3 180 55.0
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 6.9e-42 175.3 171 50.3
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 8.5e-40 168.3 93 81.7
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 5.1e-37 159.1 105 70.5
arahy.Tifrunner.gnm1.ann1.183PB6 Arachis hypogaea HOM05D003289 ORTHO05D004594 3.0e-21 106.7 163 40.5
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 1.1e-20 104.8 54 92.6
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.4e-18 97.1 98 54.1
Nitab4.5_0003532g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 7.0e-18 95.5 54 83.3
Peaxi162Scf00544g00915 Petunia axillaris HOM05D003289 ORTHO05D004594 2.0e-17 94.0 54 81.5
arahy.Tifrunner.gnm1.ann1.98W5WM Arachis hypogaea HOM05D003289 ORTHO05D016559 7.7e-17 92.0 44 88.6
Pp3c18_14020 Physcomitrium patens HOM05D003289 ORTHO05D004594 6.3e-11 72.4 138 37.7
Lsat_1_v5_gn_8_25040 Lactuca sativa HOM05D003289 ORTHO05D231847 2.5e-07 60.5 57 52.6


User provided reference genes

Program Settings