Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1713.4 829 100.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1320.8 829 75.5
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1310.8 829 75.5
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1295.4 829 74.8
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1281.2 829 74.1
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1276.5 829 73.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1268.1 829 73.5
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1245.7 831 72.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1241.5 830 72.2
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1237.2 831 72.4
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1235.3 829 70.7
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1229.2 829 70.1
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1227.6 830 69.4
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1225.3 828 72.0
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1223.0 828 70.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1217.6 829 71.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1214.9 830 70.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1213.4 830 72.0
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1211.8 829 69.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1208.7 829 70.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1208.4 829 68.8
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1208.0 828 70.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1206.0 831 68.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1204.9 830 69.6
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1204.1 830 69.5
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1201.4 830 69.5
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1200.7 831 69.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1197.6 830 69.4
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1196.4 832 69.5
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1196.4 828 69.3
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1195.3 830 69.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1193.3 830 69.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1190.3 830 69.0
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1189.9 830 69.4
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1189.5 829 67.9
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1179.5 829 68.9
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1179.1 829 67.7
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1177.2 828 68.0
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1173.3 830 68.8
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1172.9 837 68.6
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1171.8 828 67.8
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1170.6 828 67.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1170.2 828 67.9
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1169.8 829 68.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1169.8 829 68.9
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1167.9 830 69.3
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1167.1 829 67.6
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1166.8 828 66.7
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1164.8 829 68.3
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1164.8 831 68.8
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1164.1 829 68.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1158.3 828 68.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1155.6 829 68.4
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1152.5 829 67.4
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1146.0 831 66.4
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1144.8 832 68.3
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1143.3 834 67.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1142.1 829 67.9
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1139.8 830 67.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1137.1 834 67.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1132.5 831 66.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1131.3 829 67.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1130.9 834 67.1
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 834 67.6
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1125.9 893 62.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1125.5 830 65.4
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 834 67.5
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 834 67.5
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 833 65.3
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1125.2 836 65.3
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1124.4 833 64.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1123.2 836 67.6
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1122.1 836 67.7
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1121.3 830 64.7
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1121.3 831 65.8
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1119.0 824 67.1
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1118.2 831 65.7
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1116.3 837 65.1
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1114.0 833 66.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1113.6 830 64.8
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1112.4 829 65.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1104.0 777 68.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1100.5 831 63.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1088.2 832 63.5
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1079.3 829 65.1
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1077.4 924 59.5
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1076.2 829 63.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1075.5 830 64.2
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 1.6e-309 1065.8 833 62.3
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 1.4e-308 1062.8 831 61.6
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 4.0e-308 1061.2 835 62.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 2.7e-304 1048.5 849 60.4
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 3.0e-303 1045.0 833 60.4
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 2.4e-289 998.8 830 59.0
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.8e-285 984.6 831 61.3
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.1e-281 973.4 740 65.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 2.3e-279 965.7 829 58.7
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.2e-277 957.2 798 61.7
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 1.8e-268 929.5 780 58.3
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 1.3e-266 923.3 825 54.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 1.4e-260 903.3 851 53.2
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 5.0e-258 894.8 829 56.9
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 1.6e-240 836.6 587 69.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-236 822.8 581 68.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 2.6e-230 802.7 738 55.6
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.4e-223 780.4 551 68.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 2.0e-222 776.5 500 73.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.7e-210 736.9 609 56.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 9.2e-196 688.0 501 65.5
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.6e-190 669.8 863 43.9
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 1.6e-184 650.6 871 43.4
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.3e-178 630.9 810 44.1
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 6.7e-178 628.6 865 43.0
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 9.6e-177 624.8 740 45.9
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 8.7e-170 601.7 889 41.1
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.2e-160 568.5 391 70.3
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 3.3e-145 520.0 363 72.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 8.3e-120 435.6 319 66.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 8.6e-117 425.6 1009 31.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.0e-106 392.1 319 63.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 8.1e-67 259.6 620 30.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.2e-55 220.7 269 48.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.0e-53 214.5 211 49.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.3e-44 184.5 181 51.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.5e-15 89.4 67 62.7
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.4e-10 72.0 95 40.0
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 9.1e-10 70.1 213 24.9
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.5e-09 68.2 144 31.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 5.9e-09 67.4 96 41.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 7.7e-09 67.0 150 28.0
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.7e-08 65.9 69 43.5
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.5e-08 63.9 86 39.5
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 6.5e-08 63.9 118 33.1
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 4.2e-07 61.2 132 26.5
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 4.2e-07 61.2 118 33.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.5e-07 60.8 191 30.9
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.2e-07 60.5 131 31.3
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 2.1e-06 58.9 118 33.1
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 2.7e-06 58.5 121 24.8
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 4.7e-06 57.8 199 29.6
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 8.0e-06 57.0 187 29.9


User provided reference genes

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