Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 2.4e-153 545.4 274 100.0
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 3.1e-100 369.0 247 72.9
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.2e-97 359.0 247 70.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 3.2e-97 359.0 247 69.6
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 5.5e-97 358.2 247 70.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 6.1e-96 354.8 247 71.3
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.0e-95 354.0 257 68.9
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.0e-95 354.0 247 70.0
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.8e-95 353.2 247 72.1
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 2.3e-95 352.8 245 70.2
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 3.0e-95 352.4 249 67.9
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.5e-94 350.1 247 68.8
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.5e-94 350.1 245 69.0
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.5e-94 350.1 244 69.3
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 2.6e-94 349.4 247 68.8
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 4.4e-94 348.6 245 70.6
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 4.4e-94 348.6 247 69.6
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.3e-93 347.1 247 70.4
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.4e-92 343.6 247 67.6
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.8e-92 343.2 247 68.8
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 5.4e-92 341.7 247 67.2
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 5.4e-92 341.7 247 66.8
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 4.5e-91 338.6 247 66.0
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 4.5e-91 338.6 251 66.5
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 5.9e-91 338.2 245 66.5
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.0e-90 337.4 249 66.7
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 1.7e-90 336.7 247 65.6
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 2.3e-90 336.3 247 66.8
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 8.6e-90 334.3 257 66.5
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 8.6e-90 334.3 245 65.7
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.1e-89 334.0 257 65.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.1e-89 334.0 245 64.5
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 1.1e-89 334.0 247 64.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.1e-89 334.0 245 65.3
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 3.3e-89 332.4 247 67.6
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 5.6e-89 331.6 257 64.2
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-88 330.5 248 65.3
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.6e-88 330.1 245 67.3
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.6e-88 330.1 247 64.4
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.1e-88 329.7 247 65.6
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 2.8e-88 329.3 245 66.1
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 3.6e-88 328.9 247 64.0
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 6.1e-88 328.2 248 64.9
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.1e-88 328.2 248 64.9
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 8.0e-88 327.8 245 64.9
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.0e-87 327.4 259 61.4
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.0e-87 327.4 245 64.5
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.8e-87 326.6 247 65.2
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 3.0e-87 325.9 248 64.5
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 8.9e-87 324.3 245 64.1
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 1.2e-86 323.9 241 64.7
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.5e-86 323.6 245 62.9
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 3.4e-86 322.4 245 62.0
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 5.7e-86 321.6 247 61.5
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 5.7e-86 321.6 248 64.1
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 9.8e-86 320.9 249 61.0
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 1.7e-85 320.1 245 62.9
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.2e-85 319.7 249 61.4
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 3.7e-85 318.9 245 62.4
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.9e-85 318.5 247 61.9
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 4.9e-85 318.5 245 62.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 8.3e-85 317.8 245 61.2
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.4e-84 317.0 270 58.9
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 3.2e-84 315.8 270 58.5
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 5.4e-84 315.1 245 63.3
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 7.0e-84 314.7 245 62.0
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.6e-83 313.5 247 61.5
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 2.0e-83 313.2 251 60.6
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.0e-83 313.2 247 61.1
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.7e-83 312.8 249 62.2
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.6e-83 312.0 270 57.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 7.8e-83 311.2 245 61.2
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.7e-82 310.1 247 61.1
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.7e-82 310.1 247 61.1
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.3e-82 309.7 247 60.7
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.3e-82 309.7 230 64.3
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.0e-82 309.3 247 60.7
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.0e-82 309.3 322 52.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.9e-82 308.9 247 59.1
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 5.0e-82 308.5 245 59.6
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 8.6e-82 307.8 247 60.3
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.1e-81 307.4 266 56.8
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.5e-81 307.0 259 59.8
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.9e-81 306.6 259 59.1
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.5e-81 306.2 247 58.3
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 4.3e-81 305.4 245 60.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 4.3e-81 305.4 249 59.4
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 4.3e-81 305.4 249 59.4
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 4.3e-81 305.4 249 59.4
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 5.6e-81 305.1 247 59.9
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.6e-80 303.5 249 59.0
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.6e-80 303.5 249 59.0
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.6e-80 303.5 259 58.3
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.6e-80 303.5 254 59.1
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 1.6e-80 303.5 240 60.0
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.0e-80 301.2 244 59.8
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.1e-79 300.8 248 58.1
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.1e-79 300.8 247 58.3
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 3.1e-79 299.3 249 58.6
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 5.2e-79 298.5 249 58.6
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 8.9e-79 297.7 249 58.6
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 5.8e-78 295.0 249 57.8
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.9e-77 292.7 221 66.5
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 3.7e-77 292.4 222 63.1
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.9e-76 290.0 249 58.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.4e-76 289.7 243 58.0
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 9.2e-76 287.7 248 57.7
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.0e-75 286.6 297 50.5
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.3e-74 283.9 240 57.1
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.8e-71 271.6 259 53.3
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 1.5e-65 253.8 186 67.7
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 1.1e-63 247.7 182 68.7
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.4e-63 246.5 247 53.4
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.6e-62 243.0 224 52.7
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 4.4e-62 242.3 224 54.9
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.5e-59 232.6 188 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.0e-58 231.1 244 43.4
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 5.6e-57 225.3 247 44.1
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 5.2e-55 218.8 245 44.1
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 1.5e-54 217.2 187 57.8
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 3.4e-54 216.1 186 58.1
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 6.4e-53 211.8 190 55.3
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.4e-53 211.5 251 41.0
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 2.1e-51 206.8 247 47.8
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 7.8e-51 204.9 161 62.7
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 2.3e-50 203.4 158 63.3
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 7.3e-49 198.4 251 45.8
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 7.3e-49 198.4 131 72.5
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 8.1e-48 194.9 259 39.8
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 1.1e-47 194.5 138 69.6
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 5.3e-47 192.2 220 42.3
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-45 186.8 204 41.7
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.4e-44 184.1 115 74.8
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.0e-42 176.4 204 40.7
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 8.7e-42 174.9 269 38.7
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.3e-40 171.0 122 69.7
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 2.8e-40 169.9 133 57.1
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 3.7e-40 169.5 257 35.0
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 6.4e-37 158.7 117 63.2
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.2e-36 156.4 134 56.7
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 6.0e-35 152.1 129 64.3
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.1e-33 147.9 169 49.1
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.4e-31 140.2 151 52.3
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 6.5e-29 132.1 154 49.4
Lj2A1035T52 Lonicera japonica HOM05D003203 ORTHO05D003526 8.5e-21 105.1 64 75.0
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 7.4e-17 92.0 64 60.9
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 7.4e-17 92.0 61 65.6
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.5e-13 79.0 75 49.3
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 1.7e-08 64.3 37 73.0


User provided reference genes

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