Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1901.3 978 100.0
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1441.4 879 84.8
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1428.7 879 84.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1418.3 881 83.5
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1417.5 879 83.2
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1416.0 864 84.4
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1415.2 877 83.5
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1413.7 875 83.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1408.3 896 81.9
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1408.3 879 82.6
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1404.0 879 82.7
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1403.7 895 81.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1401.0 883 82.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1400.6 885 81.7
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1400.6 848 84.8
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1396.7 953 78.0
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1396.3 879 81.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1396.3 878 82.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1395.6 879 82.5
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1395.2 877 82.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1391.3 878 82.3
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1390.6 877 82.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1381.7 885 81.5
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1380.5 878 81.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1380.5 879 80.8
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1378.6 879 81.7
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1377.5 881 81.5
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1377.5 935 77.6
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1375.9 890 80.4
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1373.6 857 82.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1373.2 889 80.8
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1370.5 882 80.8
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1370.1 877 80.5
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1369.4 882 80.7
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1369.0 879 81.6
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1368.2 895 79.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1367.1 881 80.2
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1365.5 879 79.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1364.4 864 81.5
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1362.1 877 80.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1361.3 881 80.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1357.8 877 79.4
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1357.4 895 77.2
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1350.9 913 76.8
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1350.9 879 79.1
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1348.6 879 79.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1347.4 883 78.8
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1343.9 879 79.1
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1343.2 887 79.5
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1340.5 879 78.7
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1336.6 905 77.0
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1336.2 854 80.8
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1335.5 878 79.3
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1335.5 886 79.6
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1335.1 881 78.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1330.5 880 78.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1328.9 876 78.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1328.5 889 77.3
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1328.2 877 78.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1327.8 887 77.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1326.2 875 78.1
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1325.5 879 77.5
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1325.5 879 77.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1323.5 829 82.1
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1322.4 887 77.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1320.8 879 77.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1318.1 879 77.4
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1316.6 875 77.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1315.4 875 78.1
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1312.4 879 77.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1312.0 896 76.6
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1311.6 879 77.1
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1310.4 899 76.9
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1308.1 859 78.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1307.7 858 78.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1307.4 879 78.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1306.6 875 76.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1302.7 851 79.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1302.3 847 78.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1302.0 923 73.9
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1298.1 837 81.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1297.3 868 78.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1291.6 880 76.4
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1291.6 880 76.4
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1286.9 879 75.8
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1285.8 886 77.7
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1283.5 879 75.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1283.5 879 75.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1280.8 881 75.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1278.1 893 74.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1276.9 857 77.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1263.8 1084 65.0
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1260.4 875 74.3
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1258.0 984 68.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1226.1 867 72.5
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1223.0 876 72.7
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1221.1 822 77.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1216.4 855 72.7
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1214.1 881 74.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1191.8 846 73.4
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1185.6 879 69.6
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1179.5 886 69.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1169.1 884 70.9
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1151.7 871 67.7
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1147.5 934 66.5
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1132.1 792 74.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1114.0 768 75.9
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 1.4e-299 1033.1 863 62.2
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 4.8e-244 848.6 718 64.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.4e-213 746.1 557 71.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.3e-208 729.6 477 77.4
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.9e-196 689.9 529 69.6
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.2e-187 659.4 461 75.1
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 6.2e-183 645.6 341 91.5
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.2e-171 606.7 984 38.5
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 2.8e-167 593.6 472 67.4
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.7e-162 577.0 385 77.9
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.7e-153 545.8 325 85.8
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.3e-142 509.6 276 86.6
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 2.2e-127 461.1 884 36.2
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 6.8e-121 439.5 370 66.2
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 6.3e-119 433.0 237 89.0
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 6.6e-108 396.4 321 68.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 6.8e-105 386.3 550 44.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 7.0e-102 376.3 551 44.1
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.3e-97 361.3 919 30.7
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-86 325.9 174 91.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.4e-86 325.5 212 75.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.4e-86 325.5 209 79.4
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.1e-86 323.2 209 78.9
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 2.7e-85 321.2 181 84.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 2.7e-85 321.2 181 84.5
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.2e-77 295.8 335 54.3
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 6.6e-76 290.0 232 65.9
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 7.1e-70 270.0 390 45.1
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 2.7e-61 241.5 152 82.2
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.0e-57 227.6 195 67.2
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 5.3e-57 227.3 119 89.9
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.7e-55 222.2 161 71.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 8.4e-55 219.9 314 43.9
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.2e-54 218.0 137 80.3
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.6e-53 214.2 154 72.1
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 2.2e-39 168.7 113 69.9
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.1e-33 149.8 222 43.7
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.2e-32 146.4 137 62.8
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 5.9e-32 144.1 77 89.6
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.0e-31 143.3 133 60.9
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 2.9e-31 141.7 123 61.8
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.5e-27 128.6 100 76.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-26 126.3 82 74.4
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.2e-26 125.6 62 91.9
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 3.7e-26 124.8 87 71.3
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.2e-23 115.5 72 77.8
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.2e-21 109.8 65 83.1
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 7.4e-19 100.5 59 88.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.7e-18 99.4 68 69.1
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-18 98.6 77 64.9
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 6.3e-18 97.4 57 78.9
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 1.1e-17 96.7 56 78.6
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.1e-17 96.7 48 91.7
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.8e-17 95.9 89 51.7
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.7e-15 89.4 50 76.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 7.2e-14 84.0 56 69.6
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 3.0e-12 78.6 127 40.9
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 6.7e-12 77.4 46 87.0
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 2.4e-09 68.9 113 42.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 9.1e-09 67.0 150 36.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.0e-07 63.5 45 62.2
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.9e-07 62.0 47 57.4


User provided reference genes

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