Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G011730 Citrullus lanatus HOM05D004601 ORTHO05D005806 7.2e-223 776.9 393 100.0
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 5.9e-185 651.0 399 84.7
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 2.9e-171 605.5 394 78.9
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 1.4e-170 603.2 395 78.2
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 5.4e-170 601.3 393 78.6
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 1.3e-168 596.7 389 78.1
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 1.7e-168 596.3 397 77.6
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 6.6e-168 594.3 395 77.7
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 1.6e-166 589.7 395 77.2
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 3.6e-166 588.6 393 77.1
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 4.7e-166 588.2 395 77.7
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 4.7e-166 588.2 395 76.7
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 4.7e-166 588.2 402 74.6
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 4.7e-166 588.2 395 77.0
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 6.2e-166 587.8 399 74.2
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 6.2e-166 587.8 396 74.7
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 2.3e-165 585.9 392 76.5
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 2.3e-165 585.9 395 76.7
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 2.3e-165 585.9 380 78.9
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 3.1e-165 585.5 395 76.5
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 4.0e-165 585.1 395 75.2
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 4.0e-165 585.1 395 77.0
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 5.2e-165 584.7 395 76.2
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 5.2e-165 584.7 395 75.9
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 8.9e-165 583.9 394 75.1
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 8.9e-165 583.9 395 75.2
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 8.9e-165 583.9 416 72.6
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 8.9e-165 583.9 412 73.5
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 1.2e-164 583.6 399 73.9
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 1.2e-164 583.6 399 73.9
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 1.2e-164 583.6 389 76.3
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 1.5e-164 583.2 395 76.2
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 2.0e-164 582.8 395 74.9
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 5.8e-164 581.3 391 76.0
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 7.5e-164 580.9 389 76.9
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 1.3e-163 580.1 395 75.2
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 1.7e-163 579.7 395 74.9
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 2.9e-163 578.9 395 74.7
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 3.7e-163 578.6 395 74.4
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 4.9e-163 578.2 395 74.2
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 6.4e-163 577.8 395 73.9
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 8.3e-163 577.4 395 73.9
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 1.1e-162 577.0 394 75.4
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 4.1e-162 575.1 430 70.2
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 1.3e-160 570.1 393 74.8
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 2.3e-160 569.3 399 72.9
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 2.5e-159 565.8 381 77.2
Solyc07g017990.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 2.5e-159 565.8 394 74.1
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 9.5e-159 563.9 431 68.7
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 1.2e-158 563.5 393 74.3
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 1.2e-158 563.5 394 74.1
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 2.1e-158 562.8 394 73.6
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 6.8e-157 557.8 400 71.8
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 6.8e-157 557.8 398 72.9
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 6.8e-157 557.8 392 73.2
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 6.8e-157 557.8 394 72.8
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 1.2e-156 557.0 445 65.6
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 2.0e-156 556.2 392 73.0
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 1.7e-155 553.1 392 72.4
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 7.1e-154 547.7 384 73.4
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 2.1e-153 546.2 415 70.1
Nitab4.5_0000056g0070 Nicotiana tabacum HOM05D004601 ORTHO05D005806 4.6e-153 545.0 409 69.9
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 4.6e-153 545.0 393 70.5
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 1.7e-152 543.1 394 72.3
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 1.7e-152 543.1 377 74.5
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 1.1e-151 540.4 392 71.9
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 2.4e-149 532.7 377 73.5
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 5.8e-148 528.1 392 70.4
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 3.2e-146 522.3 337 78.0
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 4.2e-146 521.9 382 70.2
Peaxi162Scf00231g01116 Petunia axillaris HOM05D004601 ORTHO05D005806 2.7e-145 519.2 382 70.7
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 1.3e-144 516.9 383 70.5
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 6.6e-144 514.6 399 66.9
Haze_22027 Corylus avellana HOM05D004601 ORTHO05D005806 3.1e-141 505.8 306 83.0
Psat1g144440 Pisum sativum HOM05D004601 ORTHO05D005806 8.4e-139 497.7 346 74.3
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 3.2e-138 495.7 379 68.6
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 5.4e-138 495.0 397 64.7
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 6.0e-137 491.5 299 80.9
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.4e-133 480.3 398 61.8
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 2.9e-131 472.6 380 65.3
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 8.4e-131 471.1 318 76.7
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 3.2e-122 442.6 396 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 2.1e-121 439.9 399 56.1
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 1.5e-119 433.7 392 58.4
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 3.3e-119 432.6 377 57.3
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 1.4e-117 427.2 392 58.2
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 4.2e-114 415.6 396 54.5
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 1.5e-108 397.1 858 34.3
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 1.9e-106 390.2 301 68.8
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 8.8e-104 381.3 239 83.3
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 2.1e-97 360.1 253 72.3
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 3.2e-82 309.7 223 70.0
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 4.8e-78 295.8 231 67.1
CBR_g35050 Chara braunii HOM05D004601 ORTHO05D005806 3.3e-66 256.5 230 54.8
Lalb_Chr00c63g0413841 Lupinus albus HOM05D004601 ORTHO05D005806 1.1e-61 241.5 155 78.7
Glyma.09G060066 Glycine max HOM05D004601 ORTHO05D005806 4.1e-61 239.6 175 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 8.6e-59 231.9 370 36.5
Sopen07g006910 Solanum pennellii HOM05D004601 ORTHO05D005806 7.5e-55 218.8 141 79.4
Sopen00g010200 Solanum pennellii HOM05D004601 ORTHO05D005806 1.1e-53 214.9 179 63.7
Nitab4.5_0006199g0010 Nicotiana tabacum HOM05D004601 ORTHO05D005806 1.6e-49 201.1 167 65.9
PRCOL_00001076 Prasinoderma coloniale HOM05D004601 ORTHO05D005806 2.8e-49 200.3 380 34.7
ECA236G3967 Erigeron canadensis HOM05D004601 ORTHO05D005806 1.9e-45 187.6 112 81.2
MCO08G104 Micromonas commoda HOM05D004601 ORTHO05D005806 3.6e-41 173.3 261 39.1
CAN.G285.3 Capsicum annuum HOM05D004601 ORTHO05D005806 1.4e-40 171.4 111 78.4
Cfa023642 Carpinus fangiana HOM05D004601 ORTHO05D005806 4.1e-37 159.8 369 30.6
SEGI_06603 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 2.1e-33 147.5 217 36.9
Cre10.g433550 Chlamydomonas reinhardtii HOM05D004601 ORTHO05D005806 1.3e-30 138.3 314 34.4
SEGI_14441 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 5.4e-29 132.9 120 57.5
Nitab4.5_0006199g0030 Nicotiana tabacum HOM05D004601 ORTHO05D005806 1.1e-26 125.2 108 58.3
C02p13910 Brassica napus HOM05D004601 ORTHO05D041326 4.3e-26 123.2 172 40.7
BolC2t07510H Brassica oleracea HOM05D004601 ORTHO05D041326 9.6e-26 122.1 172 40.7
Actinidia07546 Actinidia chinensis HOM05D004601 ORTHO05D005806 2.0e-23 114.4 72 75.0
FAN10G0665 Fragaria x ananassa HOM05D004601 ORTHO05D005806 5.8e-23 112.8 65 86.2
Aqoxy295s003 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 5.4e-21 106.3 81 63.0
SEGI_11293 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 1.6e-20 104.8 171 36.8
SMO144G0102 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 7.4e-18 95.9 120 50.8
Haze_22028 Corylus avellana HOM05D004601 ORTHO05D005806 1.3e-17 95.1 120 50.8
CSS0044178 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 2.4e-16 90.9 56 71.4
Rhsim01G0114900 Rhododendron simsii HOM05D004601 ORTHO05D005806 5.3e-16 89.7 74 60.8
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 1.2e-15 88.6 44 93.2
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 2.6e-15 87.4 48 83.3
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 7.6e-15 85.9 67 64.2
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 2.2e-14 84.3 49 79.6
CBR_g50203 Chara braunii HOM05D004601 ORTHO05D005806 3.5e-12 77.0 58 55.2
SEGI_40736 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 5.1e-11 73.2 47 68.1
SMO229G0037 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 4.8e-09 66.6 64 60.9
Cre06.g277801 Chlamydomonas reinhardtii HOM05D004601 ORTHO05D143102 1.4e-08 65.1 171 27.5
TAR383G0023 Trochodendron aralioides HOM05D004601 ORTHO05D005806 1.2e-07 62.0 36 80.6
Cc07_g18020 Coffea canephora HOM05D004601 ORTHO05D005806 4.5e-07 60.1 52 61.5
Prupe.3G150300 Prunus persica HOM05D001934 ORTHO05D002139 7.6e-07 59.3 407 21.6
Eucgr.F02800 Eucalyptus grandis HOM05D001934 ORTHO05D002139 1.0e-06 58.9 410 22.0
RcHm_v2.0_Chr3g0493691 Rosa chinensis HOM05D001934 ORTHO05D002139 4.9e-06 56.6 407 20.4
RcHm_v2.0_Chr7g0206661 Rosa chinensis HOM05D001594 ORTHO05D002862 4.9e-06 56.6 66 56.1
FAN23G2419 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.5e-06 56.2 306 23.5


User provided reference genes

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