Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.5e-145 519.6 279 100.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.3e-130 469.2 275 89.5
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.5e-129 466.5 275 89.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 3.1e-119 432.2 276 84.4
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 3.4e-102 375.6 280 73.2
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.5e-97 359.4 304 64.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 4.3e-97 358.6 285 63.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 3.7e-96 355.5 283 65.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.4e-95 352.8 274 65.0
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 9.0e-95 350.9 286 66.4
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 9.0e-95 350.9 286 66.4
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.5e-94 350.1 280 65.4
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 2.0e-94 349.7 287 65.5
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.6e-94 349.4 283 64.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.4e-94 349.0 283 64.3
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 7.6e-94 347.8 283 63.6
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.3e-93 347.1 283 65.0
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.2e-93 346.3 282 64.9
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.9e-93 345.9 287 64.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 3.8e-93 345.5 287 64.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 8.4e-93 344.4 283 65.0
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-92 344.0 283 62.9
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.9e-92 343.2 283 63.6
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-92 342.8 276 64.1
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.2e-92 342.4 309 60.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.1e-91 339.7 283 63.3
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.5e-91 339.0 289 65.4
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.0e-90 337.4 290 62.8
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.3e-90 336.3 289 66.1
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.3e-90 336.3 284 64.8
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.3e-90 336.3 279 64.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.9e-90 335.5 273 66.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.1e-90 335.1 289 65.4
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.5e-89 333.6 284 67.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 3.3e-89 332.4 285 63.2
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.8e-88 329.3 293 64.5
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.7e-88 328.9 289 64.7
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 4.8e-88 328.6 284 63.4
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 6.3e-88 328.2 319 59.9
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.3e-87 325.1 289 64.0
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-86 323.2 289 63.7
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.7e-85 320.1 287 61.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 2.9e-85 319.3 288 60.4
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 5.0e-85 318.5 278 62.9
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 6.5e-85 318.2 281 61.2
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 8.5e-85 317.8 281 61.2
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 1.1e-84 317.4 283 60.1
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.9e-84 316.6 268 62.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.5e-84 316.2 284 63.4
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 5.5e-84 315.1 276 61.2
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 7.2e-84 314.7 289 61.6
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 9.3e-84 314.3 268 62.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.6e-83 313.5 268 62.3
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.7e-83 312.8 272 61.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.7e-83 312.8 284 62.3
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 4.6e-83 312.0 279 61.6
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 6.1e-83 311.6 282 62.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 7.9e-83 311.2 270 62.2
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 7.9e-83 311.2 283 59.0
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.8e-82 310.1 277 61.4
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.0e-82 309.3 268 62.3
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.1e-82 308.5 290 57.9
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.1e-81 307.4 288 64.2
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 2.5e-81 306.2 284 57.7
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 5.7e-81 305.1 269 60.6
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 7.4e-81 304.7 288 58.3
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.2e-80 303.1 280 57.1
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 6.3e-80 301.6 280 58.9
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 8.2e-80 301.2 287 58.9
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-79 300.8 278 59.7
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.4e-79 300.4 269 62.1
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.4e-79 300.4 269 62.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.4e-79 299.7 268 60.4
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 4.1e-79 298.9 282 59.6
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 5.3e-79 298.5 272 59.2
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.9e-79 298.1 269 62.1
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 2.6e-78 296.2 289 58.1
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 7.7e-78 294.7 298 58.4
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-77 293.5 278 61.9
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 2.2e-77 293.1 277 58.1
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.8e-77 292.4 280 58.2
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 3.8e-77 292.4 305 56.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 5.0e-77 292.0 319 52.0
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-76 290.8 262 59.5
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.4e-76 290.4 294 58.2
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 7.2e-76 288.1 278 56.5
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 7.2e-76 288.1 319 54.9
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 7.9e-75 284.6 280 57.1
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 2.0e-73 280.0 298 58.1
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 4.4e-73 278.9 275 61.1
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 5.7e-73 278.5 294 56.1
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.4e-70 269.2 281 55.5
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 5.9e-70 268.5 269 55.0
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 8.5e-69 264.6 285 51.9
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.9e-68 263.5 239 60.7
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 7.2e-68 261.5 280 50.4
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.7e-67 258.8 293 51.9
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.3e-66 256.5 269 53.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.1e-65 254.2 275 53.5
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.8e-64 248.8 280 51.4
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.4e-63 246.5 213 60.1
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 7.7e-62 241.5 283 50.9
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 8.2e-56 221.5 290 46.6
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.1e-55 221.1 282 46.5
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 5.9e-54 215.3 287 44.6
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.7e-53 213.8 220 55.5
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.9e-53 213.0 286 45.1
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.0e-50 204.5 289 45.3
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 5.2e-50 202.2 187 62.6
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 2.8e-48 196.4 199 53.3
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 7.2e-44 181.8 268 45.1
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 6.8e-42 175.3 107 83.2
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.7e-40 169.5 148 57.4
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 9.2e-39 164.9 186 48.9
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.9e-37 159.8 102 80.4
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.1e-36 157.9 175 54.3
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.3e-36 156.4 99 79.8
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 6.1e-35 152.1 347 34.9
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.4e-32 142.1 89 82.0
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 3.5e-30 136.3 89 76.4
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.1e-26 123.2 211 40.3
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.4e-23 112.5 74 77.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.2e-22 111.3 69 81.2
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 6.6e-21 105.5 63 81.0
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 6.2e-19 99.0 64 73.4
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 5.2e-18 95.9 92 55.4
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 6.4e-16 89.0 106 45.3
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.5e-14 83.2 105 45.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 3.9e-13 79.7 104 41.3
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 7.3e-12 75.5 57 63.2
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.8e-10 70.9 37 86.5
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.5e-06 56.6 61 45.9


User provided reference genes

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