Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G007170 Citrullus lanatus HOM05D005655 ORTHO05D007386 3.0e-252 874.8 459 100.0
MELO3C019957.2 Cucumis melo HOM05D005655 ORTHO05D007386 4.5e-168 595.1 414 75.8
CsaV3_6G004840 Cucumis sativus L. HOM05D005655 ORTHO05D007386 7.5e-163 577.8 413 74.3
Sed0016594 Sechium edule HOM05D005655 ORTHO05D007386 1.5e-150 537.0 402 70.1
RcHm_v2.0_Chr6g0273621 Rosa chinensis HOM05D005655 ORTHO05D007386 7.5e-123 444.9 407 57.0
FvH4_2g12780 Fragaria vesca HOM05D005655 ORTHO05D007386 9.9e-123 444.5 405 57.3
Prupe.8G045000 Prunus persica HOM05D005655 ORTHO05D007386 4.9e-122 442.2 404 56.4
Duzib093G0465 Durio zibethinus HOM05D005655 ORTHO05D007386 8.3e-122 441.4 401 58.4
Lj5g0012902 Lotus japonicus HOM05D005655 ORTHO05D007386 1.6e-120 437.2 406 57.9
GSVIVG01013676001 Vitis vinifera HOM05D005655 ORTHO05D007386 2.7e-120 436.4 409 58.4
Cfa018255 Carpinus fangiana HOM05D005655 ORTHO05D007386 4.6e-120 435.6 409 58.9
Atru.chr13.1965 Acer truncatum HOM05D005655 ORTHO05D007386 5.1e-119 432.2 417 56.1
Gohir.D02G067400 Gossypium hirsutum HOM05D005655 ORTHO05D007386 9.5e-118 427.9 401 57.4
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 1.2e-117 427.6 404 57.4
Gorai.005G076300 Gossypium raimondii HOM05D005655 ORTHO05D007386 1.6e-117 427.2 401 57.4
arahy.Tifrunner.gnm1.ann1.A75B0U Arachis hypogaea HOM05D005655 ORTHO05D007386 4.7e-117 425.6 401 56.6
Ca_10644_v3 Cicer arietinum L. HOM05D005655 ORTHO05D007386 4.7e-117 425.6 403 55.8
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 1.1e-116 424.5 401 57.9
Phvul.007G085300 Phaseolus vulgaris HOM05D005655 ORTHO05D007386 1.8e-116 423.7 403 54.8
TAR625G0054 Trochodendron aralioides HOM05D005655 ORTHO05D007386 4.0e-116 422.5 401 56.4
COL.COLO4_13720 Corchorus olitorius HOM05D005655 ORTHO05D007386 2.0e-115 420.2 402 55.7
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 2.0e-115 420.2 413 56.4
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 3.4e-115 419.5 385 57.1
Eucgr.F02671 Eucalyptus grandis HOM05D005655 ORTHO05D007386 7.6e-115 418.3 403 55.8
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 2.2e-114 416.8 417 54.2
CANSAT25G2324 Cannabis sativa HOM05D005655 ORTHO05D007386 6.4e-114 415.2 405 55.3
Manes.02G186000 Manihot esculenta HOM05D005655 ORTHO05D007386 1.9e-113 413.7 405 55.3
Glyma.20G171700 Glycine max HOM05D005655 ORTHO05D007386 2.4e-113 413.3 381 57.7
PGR042G2919 Punica granatum HOM05D005655 ORTHO05D007386 3.2e-113 412.9 400 55.0
QL02p036335 Quercus lobata HOM05D005655 ORTHO05D007386 3.2e-113 412.9 442 52.9
CiPaw.15G011200 Carya illinoinensis HOM05D005655 ORTHO05D007386 5.4e-113 412.1 386 58.8
Ciclev10001190m.g Citrus clementina HOM05D005655 ORTHO05D007386 1.2e-112 411.0 395 55.9
Migut.N02937 Erythranthe guttata HOM05D005655 ORTHO05D007386 7.8e-112 408.3 399 54.6
MSTRG.22119 Avicennia marina HOM05D005655 ORTHO05D007386 1.3e-111 407.5 399 55.6
TPR.G23158 Trifolium pratense HOM05D005655 ORTHO05D007386 3.0e-111 406.4 406 53.2
CSS0015534 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 2.1e-109 400.2 390 56.4
CSS0031675 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 2.1e-109 400.2 401 55.4
TWI74G0660 Tripterygium wilfordii HOM05D005655 ORTHO05D007386 2.1e-109 400.2 394 56.1
SalBow6G4612 Salvia bowleyana HOM05D005655 ORTHO05D007386 3.6e-109 399.4 401 53.9
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 4.7e-109 399.1 432 51.9
Nitab4.5_0000433g0050 Nicotiana tabacum HOM05D005655 ORTHO05D007386 5.2e-108 395.6 405 51.6
Hund26667 Selenicereus undatus HOM05D005655 ORTHO05D007386 9.0e-108 394.8 401 52.9
SGA_v2.0_scaffold371G50147 Striga asiatica HOM05D005655 ORTHO05D007386 3.4e-107 392.9 398 53.3
Hma1.2p1_0358F.1_g134910 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 5.8e-107 392.1 402 54.0
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 1.3e-106 391.0 393 55.2
Rhsim06G0093900 Rhododendron simsii HOM05D005655 ORTHO05D007386 1.7e-106 390.6 403 52.9
Haze_17840 Corylus avellana HOM05D005655 ORTHO05D007386 2.9e-106 389.8 481 49.5
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 6.4e-106 388.7 401 54.9
HanXRQChr04g0115611 Helianthus annuus HOM05D005655 ORTHO05D007386 1.1e-105 387.9 401 53.1
Lsat_1_v5_gn_1_5920 Lactuca sativa HOM05D005655 ORTHO05D007386 1.4e-105 387.5 408 53.2
Haze_17834 Corylus avellana HOM05D005655 ORTHO05D007386 2.4e-105 386.7 481 48.6
Solyc04g072140.4 Solanum lycopersicum HOM05D005655 ORTHO05D007386 2.4e-105 386.7 395 54.4
Medtr1g097390 Medicago truncatula HOM05D005655 ORTHO05D007386 3.2e-105 386.3 371 55.5
Nitab4.5_0001000g0130 Nicotiana tabacum HOM05D005655 ORTHO05D007386 4.2e-105 386.0 405 51.1
AT1G34150 Arabidopsis thaliana HOM05D005655 ORTHO05D007386 9.3e-105 384.8 395 51.1
AL1G48650 Arabidopsis lyrata HOM05D005655 ORTHO05D007386 1.6e-104 384.0 394 51.0
PGSC0003DMG400031154 Solanum tuberosum HOM05D005655 ORTHO05D007386 2.7e-104 383.3 396 53.5
CAN.G564.32 Capsicum annuum HOM05D005655 ORTHO05D007386 3.5e-104 382.9 403 52.9
A09p32350 Brassica napus HOM05D005655 ORTHO05D000003 4.6e-104 382.5 397 52.6
Sopen04g028310 Solanum pennellii HOM05D005655 ORTHO05D007386 4.6e-104 382.5 395 53.9
Gohir.A02G061800 Gossypium hirsutum HOM05D005655 ORTHO05D007386 7.8e-104 381.7 359 57.9
Carub.0001s3222 Capsella rubella HOM05D005655 ORTHO05D007386 3.0e-103 379.8 395 51.1
Thhalv10007608m.g Eutrema salsugineum HOM05D005655 ORTHO05D007386 5.1e-103 379.0 391 52.2
Sp1g29390 Schrenkiella parvula HOM05D005655 ORTHO05D007386 7.3e-102 375.2 391 51.2
BcaB07g33038 Brassica carinata HOM05D005655 ORTHO05D007386 1.3e-101 374.4 391 52.2
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 3.6e-101 372.9 441 49.9
VMungo0720G1747 Vigna mungo HOM05D005655 ORTHO05D007386 8.1e-101 371.7 422 50.0
Lj7C387T6 Lonicera japonica HOM05D005655 ORTHO05D007386 1.1e-100 371.3 380 53.7
EL10Ac1g01637 Beta vulgaris HOM05D005655 ORTHO05D007386 1.4e-100 370.9 401 50.4
C06p11890 Brassica napus HOM05D005655 ORTHO05D000003 2.4e-100 370.2 392 51.8
BolC6t36321H Brassica oleracea HOM05D005655 ORTHO05D000003 5.3e-100 369.0 392 51.8
BcaC08g43808 Brassica carinata HOM05D005655 ORTHO05D007386 6.9e-100 368.6 391 51.9
Os03g0381100 Oryza sativa ssp. japonica HOM05D005655 ORTHO05D007386 6.9e-100 368.6 401 52.1
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 1.5e-99 367.5 401 51.1
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 5.8e-99 365.5 406 50.0
PSO170G2558 Papaver somniferum HOM05D005655 ORTHO05D007386 7.6e-99 365.2 402 51.2
Cc10_g06370 Coffea canephora HOM05D005655 ORTHO05D007386 9.9e-99 364.8 393 51.1
PSO210G7095 Papaver somniferum HOM05D005655 ORTHO05D007386 3.8e-98 362.8 402 51.2
Peaxi162Scf00226g00219 Petunia axillaris HOM05D005655 ORTHO05D007386 1.9e-97 360.5 409 49.4
Thecc.10G182000 Theobroma cacao HOM05D005655 ORTHO05D007386 1.8e-95 354.0 340 56.2
vmacro21200 Vaccinium macrocarpon HOM05D005655 ORTHO05D007386 5.6e-94 349.0 401 49.4
Psat6g189760 Pisum sativum HOM05D005655 ORTHO05D007386 1.3e-93 347.8 344 54.9
ATR0564G440 Amborella trichopoda HOM05D005655 ORTHO05D007386 4.5e-91 339.3 341 54.5
Aa31LG6G8320 Aethionema arabicum HOM05D005655 ORTHO05D000003 8.4e-90 335.1 369 50.1
ECA247G4107 Erigeron canadensis HOM05D005655 ORTHO05D007386 5.5e-89 332.4 370 50.0
Sc13g0008190 Simmondsia chinensis HOM05D005655 ORTHO05D007386 1.6e-88 330.9 344 52.9
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.0e-87 328.2 338 52.1
DCAR_013167 Daucus carota HOM05D005655 ORTHO05D007386 1.9e-86 323.9 347 49.6
MD05G1036800 Malus domestica HOM05D005655 ORTHO05D007386 3.1e-84 316.6 303 54.5
Cpa.g.sc26.127 Carica papaya HOM05D005655 ORTHO05D007386 2.9e-82 310.1 418 44.3
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 6.5e-82 308.9 403 45.7
Eucgr.J00222 Eucalyptus grandis HOM05D005655 ORTHO05D007386 1.2e-80 304.7 302 55.0
Pp3c9_3740 Physcomitrium patens HOM05D005655 ORTHO05D007386 1.1e-76 291.6 421 40.1
Mapoly0139s0011 Marchantia polymorpha HOM05D005655 ORTHO05D007386 3.2e-73 280.0 403 40.4
Ah.02g115760 Amaranthus hybridus HOM05D005655 ORTHO05D007386 5.5e-73 279.3 403 41.9
Eucgr.I00104 Eucalyptus grandis HOM05D005655 ORTHO05D007386 1.6e-72 277.7 303 50.8
FAN15G2448 Fragaria x ananassa HOM05D005655 ORTHO05D007386 1.5e-70 271.2 185 70.3
Lalb_Chr02g0141641 Lupinus albus HOM05D005655 ORTHO05D007386 6.1e-64 249.2 261 54.4
Eucgr.F00074 Eucalyptus grandis HOM05D005655 ORTHO05D007386 6.3e-61 239.2 307 45.6
Hma1.2p1_0358F.1_g134900 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 2.4e-60 237.3 274 50.0
Eucgr.L00427 Eucalyptus grandis HOM05D005655 ORTHO05D007386 4.5e-59 233.0 302 45.0
Actinidia17755 Actinidia chinensis HOM05D005655 ORTHO05D007386 2.6e-54 217.2 266 47.7
Lsat_1_v5_gn_1_5940 Lactuca sativa HOM05D005655 ORTHO05D007386 2.6e-54 217.2 302 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1575 Anthoceros agrestis HOM05D005655 ORTHO05D007386 5.7e-54 216.1 255 47.1
unitig_21.g20592 Utricularia gibba HOM05D005655 ORTHO05D007386 2.2e-53 214.2 260 45.8
Cre02.g086050 Chlamydomonas reinhardtii HOM05D005655 ORTHO05D007386 3.8e-50 203.4 402 33.6
MCO10G057 Micromonas commoda HOM05D005655 ORTHO05D007386 5.0e-50 203.0 339 40.7
Lalb_Chr02g0141651 Lupinus albus HOM05D005655 ORTHO05D007386 1.6e-48 198.0 146 67.1
SHI09123 Sapria himalayana HOM05D005655 ORTHO05D007386 8.0e-48 195.7 188 55.3
SMO174G0185 Selaginella moellendorffii HOM05D005655 ORTHO05D007386 2.3e-47 194.1 191 51.8
PRCOL_00002466 Prasinoderma coloniale HOM05D005655 ORTHO05D007386 1.2e-43 181.8 466 32.8
CBR_g31748 Chara braunii HOM05D005655 ORTHO05D007386 1.0e-42 178.7 192 50.5
Cfa024548 Carpinus fangiana HOM05D005655 ORTHO05D007386 6.5e-42 176.0 361 34.6
HPP92_027831 Vanilla planifolia HOM05D005655 ORTHO05D007386 3.8e-34 150.2 149 52.3
SHI09122 Sapria himalayana HOM05D005655 ORTHO05D007386 1.9e-33 147.9 193 43.5
Actinidia17754 Actinidia chinensis HOM05D005655 ORTHO05D007386 4.7e-32 143.3 118 60.2
CARHR033660 Cardamine hirsuta HOM05D005655 ORTHO05D007386 6.3e-29 132.9 88 70.5
Glyma.20G171733 Glycine max HOM05D005655 ORTHO05D007386 1.1e-28 132.1 102 64.7
FAN24G0542 Fragaria x ananassa HOM05D005655 ORTHO05D007386 9.2e-28 129.0 120 59.2
unitig_21.g20593 Utricularia gibba HOM05D005655 ORTHO05D007386 1.7e-26 124.8 136 49.3
arahy.Tifrunner.gnm1.ann1.15WA1E Arachis hypogaea HOM05D005655 ORTHO05D007386 3.6e-24 117.1 161 42.9
MD05G1036900 Malus domestica HOM05D005655 ORTHO05D007386 2.3e-23 114.4 84 66.7
CARHR033670 Cardamine hirsuta HOM05D005655 ORTHO05D007386 3.4e-22 110.5 113 52.2
Thecc.09G171000 Theobroma cacao HOM05D005655 ORTHO05D007386 5.4e-20 103.2 96 56.2
SEGI_11089 Sequoiadendron giganteum HOM05D005655 ORTHO05D007386 9.2e-20 102.4 111 53.2
HPP92_016852 Vanilla planifolia HOM05D005655 ORTHO05D007386 5.6e-17 93.2 59 72.9
HPP92_027830 Vanilla planifolia HOM05D005655 ORTHO05D007386 5.6e-17 93.2 59 72.9
arahy.Tifrunner.gnm1.ann1.29RT0M Arachis hypogaea HOM05D005655 ORTHO05D007386 1.8e-15 88.2 109 43.1
Psat4g128520 Pisum sativum HOM05D005655 ORTHO05D007386 2.3e-15 87.8 97 53.6
SEGI_30885 Sequoiadendron giganteum HOM05D005655 ORTHO05D007386 1.7e-10 71.6 72 55.6
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 3.0e-10 70.9 192 30.7
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 6.6e-10 69.7 190 30.5
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 8.6e-10 69.3 185 30.3
SEGI_37134 Sequoiadendron giganteum HOM05D005655 ORTHO05D007386 2.5e-09 67.8 40 70.0
arahy.Tifrunner.gnm1.ann1.N6M4TT Arachis hypogaea HOM05D001194 ORTHO05D005909 7.3e-09 66.2 47 61.7
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.6e-08 65.1 153 33.3
Peaxi162Scf00226g00318 Petunia axillaris HOM05D003028 ORTHO05D003465 1.6e-08 65.1 41 68.3
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 4.7e-08 63.5 156 32.7
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 6.2e-08 63.2 153 32.7
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 8.1e-08 62.8 190 27.9
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.1e-07 62.4 153 32.0
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 1.1e-07 62.4 155 32.3
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.4e-07 62.0 161 32.3
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.4e-07 62.0 159 30.8
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 1.4e-07 62.0 155 32.9
HPP92_016851 Vanilla planifolia HOM05D005655 ORTHO05D007386 1.4e-07 62.0 46 58.7
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.8e-07 61.6 153 32.0
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 3.1e-07 60.8 158 31.0
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 5.2e-07 60.1 177 29.9
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 5.2e-07 60.1 153 32.0
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 5.2e-07 60.1 156 32.1
Thhalv10022298m.g Eutrema salsugineum HOM05D006708 ORTHO05D008321 6.8e-07 59.7 189 28.0
TPR.G7160 Trifolium pratense HOM05D005655 ORTHO05D007386 6.8e-07 59.7 47 63.8
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 1.2e-06 58.9 158 31.6
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 1.2e-06 58.9 195 27.7
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.5e-06 58.5 170 28.2
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.5e-06 58.5 153 32.7
C03p42560 Brassica napus HOM05D006708 ORTHO05D008321 2.0e-06 58.2 158 30.4
BolC3t16526H Brassica oleracea HOM05D006708 ORTHO05D008321 2.0e-06 58.2 158 30.4
BraA03t12678Z Brassica rapa HOM05D006708 ORTHO05D008321 2.0e-06 58.2 158 30.4
Cpa.g.sc146.18 Carica papaya HOM05D006708 ORTHO05D008321 2.6e-06 57.8 153 30.7
CARHR081550 Cardamine hirsuta HOM05D006708 ORTHO05D008321 3.4e-06 57.4 191 29.3
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 4.4e-06 57.0 156 30.1
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 4.4e-06 57.0 155 29.7
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 4.4e-06 57.0 180 29.4
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 4.4e-06 57.0 156 29.5
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 5.8e-06 56.6 156 30.8
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 5.8e-06 56.6 208 24.0
A03p34980 Brassica napus HOM05D006708 ORTHO05D008321 5.8e-06 56.6 158 29.7
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 5.8e-06 56.6 157 29.3
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 5.8e-06 56.6 156 31.4
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 5.8e-06 56.6 153 30.7
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 5.8e-06 56.6 162 29.6
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 5.8e-06 56.6 157 31.2
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 5.8e-06 56.6 160 30.6
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 7.5e-06 56.2 161 29.8
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 7.5e-06 56.2 158 30.4
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 7.5e-06 56.2 157 29.3
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 7.5e-06 56.2 167 30.5
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 7.5e-06 56.2 189 26.5
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 7.5e-06 56.2 155 32.3
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 9.9e-06 55.8 168 28.6
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 9.9e-06 55.8 201 28.4


User provided reference genes

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