Gene: Lsat_1_v5_gn_1_5940
General Information
Structural Information
- Species Lactuca sativa
- Gene Identifier Lsat_1_v5_gn_1_5940
- Transcript Identifier Lsat_1_v5_gn_1_5940.3
- Gene Type Coding gene
- Location Lsat_1_v8_lg_1 : 6307819-6315512 : positive
Gene Family Information
- ID HOM05D005655
- #Genes/#Species 136/99
- Phylogenetic origin
- ID ORTHO05D007386
- #Genes/#Species 131/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Lsat_1_v5_gn_1_5940.v5
- pacid 38943970
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020095 | Pseudouridine synthase I, TruA, C-terminal |
| IPR001406 | Pseudouridine synthase I, TruA |
| IPR020097 | Pseudouridine synthase I, TruA, alpha/beta domain |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| IPR010341 | Protein of unknown function DUF936, plant |
| Mapman id | Description |
|---|---|
| 16.5.3.1 | RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA) |