Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 3.3e-169 598.2 286 100.0
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.9e-95 353.2 216 80.6
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.9e-92 343.2 219 78.5
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 1.3e-72 277.3 210 70.0
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 1.6e-30 137.5 93 63.4
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 8.0e-30 135.2 87 67.8
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 3.0e-29 133.3 198 41.4
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.6e-28 130.2 147 44.9
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 5.7e-28 129.0 218 36.2
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 9.7e-28 128.3 220 38.2
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 2.8e-27 126.7 204 35.3
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 3.7e-27 126.3 90 61.1
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 4.8e-27 125.9 113 51.3
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.4e-26 124.4 115 51.3
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-26 124.0 94 56.4
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 1.8e-26 124.0 218 38.1
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.1e-26 122.9 108 51.9
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 4.1e-26 122.9 213 38.0
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 4.1e-26 122.9 200 39.0
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.3e-26 122.5 108 51.9
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 5.3e-26 122.5 94 56.4
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 7.0e-26 122.1 86 64.0
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 9.1e-26 121.7 139 44.6
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 1.2e-25 121.3 215 35.8
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.6e-25 120.9 90 56.7
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.7e-25 120.2 129 46.5
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.7e-25 120.2 97 54.6
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 2.7e-25 120.2 121 49.6
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 3.5e-25 119.8 117 47.9
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 4.5e-25 119.4 132 47.0
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 4.5e-25 119.4 132 47.0
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 1.0e-24 118.2 189 37.0
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 1.0e-24 118.2 79 63.3
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.3e-24 117.9 94 57.4
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 1.3e-24 117.9 129 45.7
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.3e-24 117.9 133 41.4
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.9e-24 116.7 195 32.8
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.9e-24 116.7 138 43.5
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 2.9e-24 116.7 136 43.4
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.9e-24 116.7 90 55.6
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 3.8e-24 116.3 85 58.8
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 3.8e-24 116.3 204 36.8
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 3.8e-24 116.3 197 36.0
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 3.8e-24 116.3 94 53.2
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 5.0e-24 115.9 85 54.1
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 6.5e-24 115.5 84 57.1
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 8.5e-24 115.2 95 51.6
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 8.5e-24 115.2 81 59.3
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 8.5e-24 115.2 94 55.3
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 1.9e-23 114.0 200 36.0
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 2.5e-23 113.6 130 45.4
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 5.5e-23 112.5 223 30.9
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 5.5e-23 112.5 105 52.4
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 9.4e-23 111.7 121 45.5
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 9.4e-23 111.7 204 35.8
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 1.2e-22 111.3 81 55.6
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.2e-22 111.3 82 58.5
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.6e-22 110.9 86 53.5
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.1e-22 110.5 80 58.8
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.7e-22 110.2 109 49.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 2.7e-22 110.2 83 55.4
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 3.6e-22 109.8 206 32.0
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.6e-22 109.8 90 56.7
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 3.6e-22 109.8 130 43.8
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 3.6e-22 109.8 79 62.0
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 4.7e-22 109.4 164 38.4
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 4.7e-22 109.4 93 55.9
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 6.1e-22 109.0 88 54.5
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 8.0e-22 108.6 81 56.8
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 8.0e-22 108.6 161 37.9
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 8.0e-22 108.6 121 41.3
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.0e-22 108.6 79 60.8
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.0e-21 108.2 80 60.0
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.0e-21 108.2 86 54.7
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.0e-21 108.2 116 47.4
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.4e-21 107.8 80 57.5
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 1.4e-21 107.8 207 35.7
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 1.4e-21 107.8 163 35.0
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.4e-21 107.8 123 42.3
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.4e-21 107.8 87 51.7
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.8e-21 107.5 83 53.0
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.8e-21 107.5 86 58.1
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.8e-21 107.5 104 49.0
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.8e-21 107.5 139 43.9
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.3e-21 107.1 89 50.6
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 2.3e-21 107.1 183 35.0
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.3e-21 107.1 139 43.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 2.3e-21 107.1 104 46.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.0e-21 106.7 81 58.0
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 4.0e-21 106.3 121 44.6
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 4.0e-21 106.3 82 52.4
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 4.0e-21 106.3 82 52.4
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 4.0e-21 106.3 89 52.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 4.0e-21 106.3 148 37.8
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.2e-21 105.9 116 44.0
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 5.2e-21 105.9 136 41.2
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 6.8e-21 105.5 86 53.5
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 6.8e-21 105.5 209 33.0
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 8.8e-21 105.1 87 51.7
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 8.8e-21 105.1 89 50.6
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.2e-20 104.8 89 50.6
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-20 104.8 115 45.2
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-20 104.8 115 45.2
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.5e-20 104.4 89 51.7
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.5e-20 104.4 216 30.1
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.5e-20 104.4 73 58.9
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.5e-20 104.4 213 31.5
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 2.0e-20 104.0 88 51.1
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 2.0e-20 104.0 117 45.3
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 2.0e-20 104.0 82 52.4
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 2.0e-20 104.0 86 53.5
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.0e-20 104.0 103 47.6
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 2.6e-20 103.6 79 57.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.6e-20 103.6 85 51.8
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-20 103.6 82 56.1
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 2.6e-20 103.6 102 48.0
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 3.4e-20 103.2 117 43.6
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.4e-20 103.2 134 45.5
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 3.4e-20 103.2 137 40.1
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 3.4e-20 103.2 94 51.1
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 4.4e-20 102.8 79 55.7
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 4.4e-20 102.8 130 40.0
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 5.7e-20 102.4 82 52.4
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 7.5e-20 102.1 86 55.8
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 7.5e-20 102.1 108 43.5
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 7.5e-20 102.1 90 51.1
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.3e-19 101.3 99 43.4
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 2.2e-19 100.5 211 28.4
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.2e-19 100.5 94 48.9
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 2.2e-19 100.5 79 58.2
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.8e-19 100.1 85 50.6
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.8e-19 100.1 78 57.7
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.8e-19 100.1 79 51.9
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.7e-19 99.8 107 47.7
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 4.8e-19 99.4 90 53.3
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.8e-19 99.4 80 55.0
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 6.3e-19 99.0 120 44.2
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.1e-18 98.2 85 50.6
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 1.4e-18 97.8 107 44.9
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.8e-18 97.4 82 50.0
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 4.1e-18 96.3 84 47.6
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 4.1e-18 96.3 108 40.7
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.2e-17 94.7 82 51.2
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.2e-17 94.7 90 48.9
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.2e-17 94.7 81 50.6
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.2e-17 94.7 112 42.9
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.6e-17 94.4 85 47.1
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.6e-17 94.4 88 45.5
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 2.7e-17 93.6 81 51.9
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 5.9e-17 92.4 88 50.0
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 5.9e-17 92.4 79 50.6
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 7.7e-17 92.0 85 47.1
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 2.9e-16 90.1 79 50.6
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 6.5e-16 89.0 105 41.9
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 1.1e-15 88.2 86 45.3
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.1e-15 88.2 138 40.6
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.5e-15 87.8 87 43.7
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.9e-15 87.4 81 49.4
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 1.9e-15 87.4 87 48.3
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 3.2e-15 86.7 81 49.4
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 3.2e-15 86.7 84 45.2
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 5.5e-15 85.9 81 49.4
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 5.5e-15 85.9 81 49.4
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 7.2e-15 85.5 88 42.0
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 9.5e-15 85.1 88 42.0
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 1.2e-14 84.7 87 42.5
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 1.2e-14 84.7 86 43.0
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.8e-14 83.6 115 37.4
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 6.8e-13 79.0 98 38.8
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.2e-12 78.2 80 43.8
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 3.7e-11 73.2 56 50.0
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 3.7e-11 73.2 60 51.7
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.8e-10 70.9 52 55.8
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 5.4e-10 69.3 47 66.0
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.5e-09 66.2 53 52.8
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 1.1e-07 61.6 80 36.2
unitig_46.g18390 Utricularia gibba HOM05D000399 ORTHO05D000304 1.1e-07 61.6 117 35.9
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 9.5e-07 58.5 36 69.4
CSS0046958 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D010012 2.1e-06 57.4 71 36.6


User provided reference genes

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