Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.4e-158 561.6 284 100.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.7e-128 461.8 290 84.8
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 4.0e-122 441.8 284 79.9
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 8.9e-82 307.8 281 58.4
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 1.3e-80 303.9 272 58.8
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 1.4e-79 300.4 282 57.4
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 1.9e-79 300.1 287 57.1
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.0e-77 292.7 269 58.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 9.5e-76 287.7 277 56.3
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 3.6e-75 285.8 281 53.4
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 6.2e-75 285.0 275 55.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 3.1e-74 282.7 277 54.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 1.2e-73 280.8 284 53.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 2.0e-73 280.0 279 53.8
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 3.4e-73 279.3 289 53.6
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 4.4e-73 278.9 282 53.9
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 1.3e-72 277.3 287 54.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 1.3e-72 277.3 284 53.2
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 4.9e-72 275.4 284 53.5
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 6.4e-72 275.0 286 54.5
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 1.1e-71 274.2 293 54.3
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 4.1e-71 272.3 283 52.7
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 7.1e-71 271.6 287 52.6
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 7.1e-71 271.6 283 53.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.1e-70 270.0 279 53.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 2.7e-70 269.6 302 51.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.5e-70 269.2 279 53.0
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 3.5e-70 269.2 272 54.8
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 7.8e-70 268.1 272 54.8
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 7.8e-70 268.1 288 52.4
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 1.0e-69 267.7 278 53.2
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 2.3e-69 266.5 279 52.3
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.9e-69 265.8 279 52.0
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 5.1e-69 265.4 299 50.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.5e-68 263.8 293 49.8
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.3e-68 262.7 280 52.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 4.3e-68 262.3 162 85.2
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 7.3e-68 261.5 283 51.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 1.6e-67 260.4 274 52.6
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 1.1e-66 257.7 282 52.1
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.8e-66 256.9 292 49.3
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 2.4e-66 256.5 287 49.1
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 3.1e-66 256.1 293 49.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 5.2e-66 255.4 270 50.4
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 1.2e-65 254.2 265 52.1
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.2e-65 254.2 281 50.5
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.5e-65 253.8 293 49.1
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.0e-65 253.4 292 49.3
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 2.0e-65 253.4 279 51.3
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 2.6e-65 253.1 278 50.4
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 5.8e-65 251.9 282 50.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.7e-64 250.4 271 52.4
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.4e-63 247.3 269 50.9
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.2e-63 245.7 265 55.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 1.7e-61 240.4 271 48.7
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 1.7e-61 240.4 278 50.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 1.6e-59 233.8 281 48.8
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 1.6e-59 233.8 297 46.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 2.1e-59 233.4 311 42.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 2.1e-59 233.4 279 47.7
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 2.8e-59 233.0 266 49.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 1.4e-58 230.7 316 41.8
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 2.0e-57 226.9 316 42.1
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 5.8e-57 225.3 310 42.3
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 8.4e-56 221.5 331 41.7
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 3.2e-55 219.5 324 41.7
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 4.2e-55 219.2 276 45.3
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 4.2e-55 219.2 268 47.4
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 7.9e-54 214.9 319 39.8
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 1.0e-53 214.5 279 45.5
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 1.7e-53 213.8 327 42.2
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 3.0e-53 213.0 282 45.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 6.6e-53 211.8 321 41.1
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 4.3e-52 209.1 312 40.1
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 4.3e-52 209.1 312 40.1
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 9.6e-52 208.0 270 43.0
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 3.6e-51 206.1 326 39.9
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 4.8e-51 205.7 312 40.1
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 4.8e-51 205.7 312 40.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 1.8e-50 203.8 341 39.3
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 2.0e-49 200.3 302 42.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 3.4e-49 199.5 277 43.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 5.1e-45 185.7 172 57.0
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 6.2e-43 178.7 164 56.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.4e-42 177.6 222 45.5
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 8.4e-40 168.3 265 38.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.1e-39 167.9 163 54.0
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 3.2e-39 166.4 279 40.5
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 6.7e-37 158.7 200 44.5
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 5.0e-32 142.5 200 45.5
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 1.1e-31 141.4 200 43.0
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 5.5e-31 139.0 280 35.7
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.7e-30 136.7 120 60.0
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.9e-30 135.2 265 34.0
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 6.7e-29 132.1 114 61.4
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 3.3e-28 129.8 185 44.3
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 3.7e-27 126.3 276 33.3
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 2.2e-24 117.1 308 28.6
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.6e-22 109.4 193 40.9
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 3.3e-20 103.2 122 51.6
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 7.4e-20 102.1 117 47.0
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 3.7e-19 99.8 269 26.8
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.8e-18 97.4 186 30.1
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 3.1e-18 96.7 71 69.0
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 5.3e-18 95.9 81 60.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 2.6e-17 93.6 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 4.5e-17 92.8 249 29.7
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.5e-17 92.8 254 29.5
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 5.9e-17 92.4 104 46.2
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.1e-15 88.2 81 63.0
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.1e-15 88.2 79 60.8
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.2e-15 86.3 102 51.0
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 2.4e-10 70.5 90 46.7
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 4.1e-10 69.7 73 49.3
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 4.5e-09 66.2 61 59.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.8e-08 63.2 72 47.2
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.8e-08 63.2 72 47.2
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.5e-07 61.2 72 45.8
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 7.2e-07 58.9 75 40.0


User provided reference genes

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