Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2958.7 1518 100.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2707.9 1495 93.6
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2610.9 1494 89.6
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2412.5 1503 85.9
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2176.0 1496 75.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2146.7 1498 74.7
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2106.3 1497 73.4
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2090.8 1497 72.9
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2087.0 1459 74.6
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2083.1 1494 73.2
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2077.8 1497 72.3
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2077.8 1499 72.0
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2077.0 1493 72.8
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2076.2 1490 72.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2048.1 1494 70.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2043.9 1499 71.4
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2039.6 1545 70.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2032.3 1500 70.5
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2030.4 1497 71.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2025.4 1504 70.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2021.9 1498 70.2
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2020.0 1498 71.0
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2014.2 1500 70.2
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2007.6 1495 70.6
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2007.3 1483 71.1
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2006.1 1509 70.5
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2005.3 1494 70.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2003.8 1496 71.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1997.2 1424 73.0
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1991.9 1503 70.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1991.5 1459 70.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1989.5 1499 70.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1986.5 1499 70.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1986.5 1499 70.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1981.5 1499 70.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1950.6 1506 68.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1947.9 1475 69.6
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1947.9 1502 68.4
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1936.4 1513 67.9
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1935.6 1499 69.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1932.5 1510 68.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1913.3 1502 68.3
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1912.9 1575 64.9
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1910.6 1504 67.7
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1903.6 1501 67.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1890.2 1479 66.5
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1887.5 1496 66.6
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1887.5 1506 65.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1872.1 1490 65.5
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1870.1 1494 66.9
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1867.0 1497 66.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1862.8 1458 65.6
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1859.3 1495 65.5
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1853.6 1490 64.8
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1853.2 1532 65.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1846.6 1507 64.0
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1846.6 1507 64.0
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1846.2 1505 65.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1844.7 1448 67.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1842.4 1463 66.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1842.4 1465 65.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1840.1 1461 64.7
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1840.1 1506 63.8
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1838.9 1458 66.1
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1835.8 1457 65.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1833.9 1508 63.7
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1833.9 1508 63.7
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1828.9 1576 63.1
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1825.4 1506 63.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1825.4 1426 67.8
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1823.9 1459 64.8
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1822.8 1514 64.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1822.4 1459 64.8
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1822.4 1461 64.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1819.3 1495 64.3
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1817.4 1547 63.3
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1816.2 1495 64.1
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1816.2 1488 64.2
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1805.4 1499 63.8
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1788.5 1494 63.1
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1781.9 1352 68.9
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1775.8 1456 63.7
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1755.0 1350 67.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1748.8 1490 62.2
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1747.6 1563 61.0
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1737.2 1520 61.7
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1682.9 1572 59.5
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1673.3 1515 59.4
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1668.3 1573 59.2
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1657.5 1490 59.7
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1600.9 1398 61.8
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1490.3 1520 55.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1468.8 1524 54.5
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1357.4 1073 66.8
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1304.3 1008 70.0
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1303.9 1534 48.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1272.7 1536 47.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1236.5 1517 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1219.5 1496 46.4
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1158.3 901 67.0
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.1e-310 1069.7 1005 59.4
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 1.0e-288 997.7 694 73.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-287 993.4 861 59.6
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 6.7e-285 984.9 977 56.9
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 8.7e-285 984.6 1506 39.9
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 5.2e-261 905.6 645 69.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.2e-186 657.1 488 69.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.5e-178 630.9 507 65.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 7.4e-167 592.8 438 68.3
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 7.4e-167 592.8 566 58.1
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.9e-161 572.8 583 53.5
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.5e-146 525.4 342 79.2
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.0e-144 519.2 495 57.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.0e-135 488.4 517 54.7
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.0e-132 478.4 523 50.7
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 5.0e-131 473.8 558 50.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 9.2e-125 453.0 510 51.6
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.5e-119 433.3 424 53.8
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 9.8e-111 406.4 489 50.7
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.9e-102 377.5 396 55.3
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.0e-99 369.8 283 65.7
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.3e-99 369.4 324 60.8
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.1e-96 359.8 290 64.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.8e-95 354.0 348 53.4
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.1e-90 339.7 375 52.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.3e-82 310.5 368 52.2
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.2e-63 250.0 1380 23.3
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.2e-44 186.8 189 55.0
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.1e-44 186.0 120 75.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.4e-43 183.3 171 62.6
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.6e-42 179.1 394 30.5
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 8.5e-38 164.1 115 73.0
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.6e-34 152.5 443 30.7
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.8e-33 148.3 90 88.9
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 8.2e-33 147.5 118 58.5
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.6e-31 142.5 274 40.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.7e-30 139.8 95 72.6
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-29 136.3 78 87.2
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.5e-29 136.0 70 94.3
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.8e-27 129.8 93 71.0
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-26 127.1 94 69.1
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 4.1e-24 118.6 99 62.6
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.3e-22 113.6 79 69.6
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.1e-20 106.3 115 52.2
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.6e-20 105.5 61 86.9
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.7e-17 96.7 99 52.5
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.7e-17 96.7 197 34.5
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.0e-15 89.7 68 67.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.5e-15 89.0 48 87.5
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.0e-14 87.4 48 85.4
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 3.0e-11 75.9 53 67.9
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 4.0e-11 75.5 99 46.5
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 1.1e-08 67.4 139 34.5


User provided reference genes

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