Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 0.0e+00 1377.8 667 100.0
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 0.0e+00 1255.4 661 92.4
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 0.0e+00 1255.4 661 92.0
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 0.0e+00 1134.4 668 85.0
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 1.8e-311 1072.0 663 78.3
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 4.1e-311 1070.8 662 78.5
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 5.0e-309 1063.9 662 77.5
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 8.5e-309 1063.1 662 77.3
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 1.1e-308 1062.8 661 77.8
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 1.2e-307 1059.3 662 77.0
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 4.7e-307 1057.4 663 78.0
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 6.1e-307 1057.0 662 77.2
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 1.0e-306 1056.2 662 76.4
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 2.6e-302 1041.6 663 76.8
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 4.5e-302 1040.8 662 76.0
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 5.9e-302 1040.4 662 75.8
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 5.0e-301 1037.3 663 75.6
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 7.2e-300 1033.5 662 75.8
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 1.6e-299 1032.3 662 75.1
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 2.1e-299 1031.9 662 76.0
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 1.4e-298 1029.2 662 75.4
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 1.5e-297 1025.8 662 75.5
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 5.9e-294 1013.8 662 74.3
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 1.9e-292 1008.8 664 74.2
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 2.7e-291 1005.0 666 72.7
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 4.7e-291 1004.2 666 74.0
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 1.7e-288 995.7 708 70.2
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 1.1e-287 993.0 663 73.8
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 2.0e-286 988.8 662 71.6
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 1.1e-284 983.0 663 71.5
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 1.5e-284 982.6 662 72.1
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 1.9e-284 982.2 663 72.1
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 3.3e-284 981.5 662 70.8
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 1.2e-283 979.5 661 73.1
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 3.6e-283 978.0 663 70.4
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 5.2e-282 974.2 601 77.4
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 2.0e-281 972.2 663 70.7
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 2.2e-280 968.8 662 70.1
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 3.7e-280 968.0 663 70.7
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 4.9e-280 967.6 663 70.9
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 6.3e-280 967.2 662 71.3
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 2.4e-279 965.3 664 70.3
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 4.1e-279 964.5 663 70.7
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 5.9e-278 960.7 664 70.3
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 5.9e-278 960.7 664 70.0
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 5.9e-278 960.7 664 70.0
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 7.8e-278 960.3 666 68.8
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 1.0e-277 959.9 665 71.7
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 1.0e-277 959.9 662 71.3
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 2.3e-277 958.7 664 70.0
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 3.9e-277 958.0 663 70.1
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 1.1e-276 956.4 663 71.3
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 2.5e-276 955.3 663 69.8
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 3.4e-273 944.9 662 69.0
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 4.9e-272 941.0 649 70.0
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 2.0e-270 935.6 664 69.0
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 1.7e-269 932.6 665 69.5
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 6.6e-269 930.6 666 67.7
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 6.2e-267 924.1 666 68.5
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 2.6e-265 918.7 696 64.4
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 7.5e-265 917.1 665 67.7
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 4.9e-264 914.4 673 67.2
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 1.4e-263 912.9 533 81.8
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 4.1e-263 911.4 598 71.1
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 7.1e-263 910.6 666 65.5
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.5e-260 902.9 574 74.4
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 2.8e-259 898.7 548 78.3
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 1.5e-257 892.9 658 65.7
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 9.9e-257 890.2 617 68.9
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 6.4e-256 887.5 662 64.7
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 1.4e-255 886.3 600 71.0
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 2.1e-254 882.5 533 78.2
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 8.1e-251 870.5 662 62.8
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 1.1e-250 870.2 736 62.1
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 7.6e-249 864.0 587 69.8
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 2.4e-247 859.0 543 75.1
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 3.9e-237 825.1 662 64.5
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.1e-236 823.5 578 71.3
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 7.3e-236 820.8 578 70.9
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 1.1e-231 807.0 662 63.0
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 6.2e-227 791.2 625 61.9
Lj6A637T63 Lonicera japonica HOM05D004511 ORTHO05D005348 8.1e-227 790.8 486 78.0
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 8.7e-221 770.8 571 65.8
vmacro08562 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 6.5e-216 754.6 461 79.4
CSS0015875 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 2.5e-207 726.1 447 77.4
CAN.G524.10 Capsicum annuum HOM05D004511 ORTHO05D005348 2.4e-194 682.9 439 74.5
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 7.0e-194 681.4 612 52.8
Manes.03G157900 Manihot esculenta HOM05D004511 ORTHO05D005348 1.8e-189 666.8 415 77.3
Hund00489 Selenicereus undatus HOM05D004511 ORTHO05D005348 5.2e-189 665.2 457 69.6
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 4.8e-187 658.7 644 51.2
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.1e-186 657.5 449 72.6
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.6e-182 643.7 456 69.3
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 1.9e-175 620.2 562 53.2
SHI00812 Sapria himalayana HOM05D004511 ORTHO05D005348 3.6e-174 615.9 502 61.2
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 2.6e-164 583.2 405 68.9
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 5.9e-161 572.0 584 47.8
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 1.2e-129 468.0 408 59.3
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.4e-122 442.6 369 61.8
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 5.6e-111 406.0 284 69.4
Hund00476 Selenicereus undatus HOM05D004511 ORTHO05D005348 7.1e-106 389.0 258 71.7
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 2.1e-102 377.5 351 57.0
CSS0022858 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 2.6e-100 370.5 208 81.7
CSS0049524 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 5.1e-96 356.3 235 74.0
Cpa.g.sc59.13 Carica papaya HOM05D004511 ORTHO05D005348 5.7e-95 352.8 234 73.5
CDE08G1197 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 6.1e-89 332.8 238 68.5
Haze_11476 Corylus avellana HOM05D004511 ORTHO05D005348 7.4e-79 299.3 272 59.6
Glyma.20G073400 Glycine max HOM05D004511 ORTHO05D005348 8.0e-73 279.3 204 67.2
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 2.3e-72 277.7 223 64.1
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 1.1e-66 258.8 736 29.8
Hund00475 Selenicereus undatus HOM05D004511 ORTHO05D005348 4.7e-65 253.4 214 58.9
TPR.G17618 Trifolium pratense HOM05D004511 ORTHO05D005348 1.2e-63 248.8 247 53.4
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 3.2e-58 230.7 623 29.4
Oeu003036.1 Olea europaea HOM05D004511 ORTHO05D005348 1.8e-56 224.9 218 54.1
Haze_11474 Corylus avellana HOM05D004511 ORTHO05D005348 6.3e-54 216.5 137 70.1
Psat3g154520 Pisum sativum HOM05D004511 ORTHO05D005348 5.6e-50 203.4 200 54.0
VMungo0720G0419 Vigna mungo HOM05D004511 ORTHO05D005348 4.0e-48 197.2 181 55.8
SEGI_15545 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 1.5e-47 195.3 163 59.5
CBR_g22304 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-47 194.5 204 46.6
SHI00817 Sapria himalayana HOM05D004511 ORTHO05D005348 3.7e-46 190.7 120 72.5
Glyma.10G121578 Glycine max HOM05D004511 ORTHO05D005348 7.0e-45 186.4 116 73.3
unitig_747.g21672 Utricularia gibba HOM05D004511 ORTHO05D005348 1.0e-43 182.6 118 68.6
Glyma.10G121584 Glycine max HOM05D004511 ORTHO05D005348 1.3e-43 182.2 112 74.1
Oeu003059.1 Olea europaea HOM05D004511 ORTHO05D005348 2.3e-43 181.4 215 48.8
Glyma.10G121600 Glycine max HOM05D004511 ORTHO05D005348 5.0e-43 180.3 112 74.1
Oeu003044.1 Olea europaea HOM05D004511 ORTHO05D005348 5.6e-42 176.8 212 48.6
CDE08G0287 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 4.7e-41 173.7 118 67.8
Glyma.10G121560 Glycine max HOM05D004511 ORTHO05D005348 4.7e-41 173.7 129 65.1
SEGI_26830 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 3.1e-40 171.0 121 62.8
vmacro08561 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 4.1e-37 160.6 82 89.0
Sopen09g033860 Solanum pennellii HOM05D004511 ORTHO05D005348 4.3e-34 150.6 104 75.0
CSS0045058 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 6.4e-30 136.7 81 79.0
CSS0023992 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 1.9e-29 135.2 81 77.8
Atru.chr4.2015 Acer truncatum HOM05D004511 ORTHO05D005348 9.2e-29 132.9 232 37.9
Solyc09g090890.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 8.6e-27 126.3 98 67.3
Ca_30594_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.3e-26 124.4 72 79.2
CSS0010114 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 1.6e-25 122.1 120 51.7
TPR.G7054 Trifolium pratense HOM05D004511 ORTHO05D005348 2.6e-23 114.8 60 85.0
Lj6A637T62 Lonicera japonica HOM05D004511 ORTHO05D005348 6.4e-22 110.2 56 87.5
CSS0021105 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 5.1e-19 100.5 95 53.7
SEGI_27053 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 1.1e-18 99.4 82 58.5
Ca_21499_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.3e-14 85.9 94 47.9
Cre06.g250850 Chlamydomonas reinhardtii HOM05D004511 ORTHO05D005348 2.2e-14 85.1 229 34.5
Lsat_1_v5_gn_1_68561 Lactuca sativa HOM05D004511 ORTHO05D005348 6.4e-14 83.6 85 56.5
CDE08G1007 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 4.2e-13 80.9 40 87.5
Cpa.g.c32688 Carica papaya HOM05D004511 ORTHO05D005348 2.1e-12 78.6 40 82.5
Atru.chr4.2014 Acer truncatum HOM05D004511 ORTHO05D005348 4.3e-10 70.9 89 50.6
ATR0787G159 Amborella trichopoda HOM05D004511 ORTHO05D005348 2.2e-06 58.5 39 61.5


User provided reference genes

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