Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 2.3e-212 741.9 353 100.0
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 2.8e-194 681.8 350 92.9
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 8.5e-191 670.2 350 91.1
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 1.2e-176 623.2 350 84.0
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 5.4e-153 544.7 349 72.5
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 2.0e-152 542.7 350 72.3
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 3.5e-152 542.0 351 73.8
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 2.3e-151 539.3 351 72.4
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 1.1e-150 537.0 347 73.8
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 1.9e-150 536.2 350 71.4
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 3.1e-148 528.9 379 68.1
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 5.2e-148 528.1 352 71.6
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 8.9e-148 527.3 351 71.8
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 8.9e-148 527.3 351 71.8
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 2.0e-147 526.2 350 70.0
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 2.6e-147 525.8 351 72.4
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 3.4e-147 525.4 351 71.5
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 5.8e-147 524.6 352 70.7
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 9.8e-147 523.9 352 70.5
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.9e-146 521.5 352 70.5
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 6.4e-146 521.2 351 71.2
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 8.3e-146 520.8 354 71.5
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.9e-145 519.6 352 69.3
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 4.6e-144 515.0 351 70.4
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 5.0e-143 511.5 350 69.4
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 9.5e-142 507.3 350 68.9
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 3.6e-141 505.4 352 69.0
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 2.0e-139 499.6 350 68.3
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 3.4e-139 498.8 354 67.8
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 1.3e-138 496.9 352 67.9
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 3.7e-138 495.4 350 65.7
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 4.1e-137 491.9 354 67.2
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 5.4e-137 491.5 350 65.1
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 2.7e-136 489.2 349 66.5
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 7.8e-136 487.6 350 66.0
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 6.6e-135 484.6 351 66.4
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 2.8e-133 479.2 350 64.0
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 6.2e-133 478.0 350 63.7
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 2.3e-132 476.1 350 64.3
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 2.3e-132 476.1 356 64.6
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 7.6e-131 471.1 350 66.3
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 2.2e-130 469.5 355 63.9
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 1.4e-129 466.8 350 62.3
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 1.4e-129 466.8 349 63.6
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 1.2e-128 463.8 354 63.0
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 1.6e-128 463.4 354 63.3
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 7.8e-128 461.1 351 63.2
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 1.7e-127 459.9 349 62.5
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 6.6e-127 458.0 350 64.3
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 8.6e-127 457.6 351 63.0
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 5.6e-126 454.9 353 61.2
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 7.3e-126 454.5 395 59.7
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 7.3e-126 454.5 349 62.5
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 3.6e-125 452.2 349 61.3
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 6.2e-125 451.4 351 61.5
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 5.8e-123 444.9 328 66.2
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 5.8e-123 444.9 267 72.7
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 7.6e-123 444.5 358 60.3
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 7.6e-123 444.5 349 62.2
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 6.4e-122 441.4 353 62.0
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 6.4e-122 441.4 347 62.0
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 9.3e-121 437.6 352 60.8
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 1.7e-119 433.3 357 60.2
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 1.1e-118 430.6 353 60.6
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 2.5e-118 429.5 391 54.5
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 9.6e-118 427.6 348 58.9
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 1.3e-117 427.2 351 57.5
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 3.6e-117 425.6 351 57.0
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 3.6e-117 425.6 266 71.8
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 3.6e-117 425.6 347 61.4
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 3.6e-117 425.6 384 56.8
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 4.8e-117 425.2 348 60.1
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 8.1e-117 424.5 351 57.0
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 8.1e-117 424.5 321 64.5
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 2.4e-116 422.9 354 56.8
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 4.0e-116 422.2 351 57.5
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 6.9e-116 421.4 350 57.4
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 1.5e-115 420.2 351 55.8
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 2.0e-115 419.9 350 57.1
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 2.6e-115 419.5 350 57.1
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 7.6e-115 417.9 380 55.5
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 1.3e-114 417.2 350 57.1
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 1.1e-113 414.1 349 57.3
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 2.4e-113 412.9 317 61.8
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 9.3e-113 411.0 350 56.9
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 4.6e-112 408.7 350 56.3
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 1.9e-110 403.3 349 57.0
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 2.8e-109 399.4 351 54.7
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 8.1e-109 397.9 368 55.7
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 1.8e-108 396.7 348 56.9
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 5.8e-107 391.7 350 55.7
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 7.1e-105 384.8 350 55.1
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 5.1e-103 378.6 351 55.0
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 5.8e-99 365.2 382 51.3
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 1.6e-96 357.1 352 53.7
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 5.1e-95 352.1 352 52.8
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 1.7e-90 337.0 267 58.4
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 5.5e-89 332.0 350 46.6
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 1.0e-82 311.2 222 64.0
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 1.4e-71 274.2 363 39.9
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 5.0e-66 255.8 159 74.8
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 4.2e-65 252.7 270 46.7
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 1.2e-48 198.0 156 61.5
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 2.1e-48 197.2 164 59.1
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 5.2e-47 192.6 127 70.9
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 1.1e-44 184.9 150 61.3
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 8.9e-39 165.2 346 31.2
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 2.9e-29 133.7 133 50.4
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 3.3e-25 120.2 68 73.5
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 4.3e-25 119.8 69 71.0
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 1.7e-21 107.8 401 26.9
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 8.3e-21 105.5 117 47.0
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 1.4e-20 104.8 115 47.0
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 4.0e-15 86.7 95 42.1
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.7e-10 71.2 66 56.1
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 8.7e-10 68.9 42 73.8
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 9.6e-09 65.5 141 28.4
CBR_g13009 Chara braunii HOM05D006688 ORTHO05D008550 2.1e-08 64.3 51 52.9
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 3.1e-07 60.5 209 25.8
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 6.9e-07 59.3 231 24.2
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 1.5e-06 58.2 145 30.3
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 2.6e-06 57.4 150 27.3
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 3.4e-06 57.0 150 30.0
Eucgr.E02826 Eucalyptus grandis HOM05D001335 ORTHO05D001184 4.4e-06 56.6 158 27.2
BolC9t54362H Brassica oleracea HOM05D050588 ORTHO05D042257 5.8e-06 56.2 42 61.9
Duzib147G1526 Durio zibethinus HOM05D001335 ORTHO05D001184 5.8e-06 56.2 64 40.6
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 5.8e-06 56.2 97 30.9
Pp3c14_5270 Physcomitrium patens HOM05D021458 ORTHO05D023500 5.8e-06 56.2 91 30.8
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 7.6e-06 55.8 176 26.7
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 7.6e-06 55.8 107 28.0
Eucgr.E02828 Eucalyptus grandis HOM05D001335 ORTHO05D001184 7.6e-06 55.8 158 25.3
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 7.6e-06 55.8 126 31.0
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 7.6e-06 55.8 106 31.1
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 7.6e-06 55.8 144 27.8
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 7.6e-06 55.8 153 24.2
Pp3c10_5380 Physcomitrium patens HOM05D021458 ORTHO05D023500 7.6e-06 55.8 91 30.8
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 9.9e-06 55.5 126 31.0


User provided reference genes

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