Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.6e-149 532.7 262 100.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 7.1e-118 427.6 236 89.4
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 3.0e-116 422.2 236 87.7
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 1.8e-113 412.9 236 86.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 7.2e-94 347.8 235 71.1
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 9.4e-94 347.4 236 71.6
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 1.2e-93 347.1 236 70.8
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 4.6e-93 345.1 217 78.8
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 6.1e-93 344.7 236 69.5
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 6.1e-93 344.7 236 70.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.0e-92 344.0 236 68.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.4e-92 343.6 236 68.6
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 1.4e-92 343.6 236 70.8
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 1.4e-92 343.6 217 78.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.8e-92 343.2 236 70.8
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 2.3e-92 342.8 236 68.2
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.3e-92 342.8 236 68.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.3e-92 342.8 236 68.6
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 2.3e-92 342.8 209 78.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.9e-92 342.0 217 77.9
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 3.9e-92 342.0 236 68.2
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 3.9e-92 342.0 236 69.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 6.7e-92 341.3 236 67.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.5e-91 340.1 215 73.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.0e-91 339.7 236 67.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 3.3e-91 339.0 236 68.6
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 3.3e-91 339.0 236 68.6
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 4.3e-91 338.6 236 68.2
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 4.3e-91 338.6 236 69.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 7.4e-91 337.8 235 68.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 7.4e-91 337.8 236 68.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 7.4e-91 337.8 236 68.2
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 9.7e-91 337.4 236 68.6
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-90 337.0 236 69.9
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 3.7e-90 335.5 236 69.5
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.8e-90 335.1 236 67.4
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 8.2e-90 334.3 236 67.8
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 1.4e-89 333.6 235 70.6
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 1.4e-89 333.6 237 67.5
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 4.1e-89 332.0 215 74.9
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 6.9e-89 331.3 236 66.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.2e-88 330.5 235 67.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 2.6e-88 329.3 215 72.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.4e-88 328.9 236 66.1
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 5.9e-88 328.2 214 73.4
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 5.9e-88 328.2 236 66.5
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 7.7e-88 327.8 215 72.6
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 1.0e-87 327.4 236 68.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 1.0e-87 327.4 236 68.2
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.0e-87 327.4 236 66.5
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 5.0e-87 325.1 236 65.3
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 5.0e-87 325.1 215 73.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 6.5e-87 324.7 236 64.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 6.5e-87 324.7 236 66.1
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 6.5e-87 324.7 236 66.1
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 1.4e-86 323.6 215 70.2
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 1.9e-86 323.2 215 70.7
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 2.5e-86 322.8 236 65.7
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 3.2e-86 322.4 236 65.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.2e-86 322.4 215 71.2
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 3.2e-86 322.4 242 64.5
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 4.2e-86 322.0 215 70.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 4.2e-86 322.0 236 65.3
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 4.2e-86 322.0 215 70.2
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 9.4e-86 320.9 215 70.7
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 9.4e-86 320.9 204 76.0
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 1.6e-85 320.1 236 65.3
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 1.6e-85 320.1 236 65.3
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 1.6e-85 320.1 215 71.2
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 4.7e-85 318.5 236 64.8
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 6.7e-84 314.7 236 63.6
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 2.0e-83 313.2 236 64.0
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 5.7e-83 311.6 204 73.0
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 9.7e-83 310.8 236 61.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 8.2e-82 307.8 215 66.0
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 8.2e-82 307.8 203 70.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.4e-81 307.0 203 70.9
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 7.0e-81 304.7 236 61.9
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 9.1e-81 304.3 236 60.6
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 2.6e-80 302.8 236 61.9
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 8.5e-79 297.7 236 58.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 1.4e-78 297.0 236 65.3
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 4.2e-78 295.4 216 69.4
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 5.5e-78 295.0 216 65.3
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 7.2e-78 294.7 229 62.9
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 9.4e-78 294.3 217 64.5
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 4.7e-77 292.0 216 63.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 5.2e-76 288.5 215 66.0
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 5.2e-76 288.5 216 63.9
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 6.7e-76 288.1 208 68.3
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 1.3e-74 283.9 215 65.1
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 6.3e-74 281.6 235 54.5
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 3.5e-72 275.8 236 54.7
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 4.5e-72 275.4 215 62.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 1.0e-71 274.2 281 52.7
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.6e-69 266.9 204 60.3
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.0e-68 262.7 243 51.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.6e-67 259.6 236 54.7
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.1e-65 254.2 243 48.6
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.9e-62 243.4 235 51.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 2.0e-48 196.8 264 43.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 4.0e-44 182.6 215 41.4
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.7e-39 167.2 191 49.2
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 5.6e-38 162.2 123 64.2
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 9.5e-38 161.4 104 73.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 3.4e-35 152.9 129 57.4
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 7.1e-33 145.2 120 60.0
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.9e-30 137.1 238 34.9
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-29 134.4 97 61.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-26 124.0 123 50.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 5.4e-17 92.4 65 67.7
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.3e-15 87.8 157 33.1
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.7e-10 70.9 44 72.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 9.3e-09 65.1 158 27.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.7e-07 60.8 47 59.6
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.1e-07 59.3 75 40.0
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.6e-07 58.9 47 59.6


User provided reference genes

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