Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.3e-201 706.4 417 100.0
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.4e-176 622.5 422 83.9
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.5e-174 614.4 418 87.3
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 8.5e-174 614.0 418 87.3
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.5e-174 614.0 418 87.3
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 5.5e-173 611.3 418 87.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 9.4e-173 610.5 417 83.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 3.0e-171 605.5 418 84.2
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 4.0e-171 605.1 417 83.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 6.8e-171 604.4 416 82.2
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.7e-169 599.7 422 83.6
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.8e-169 599.0 418 86.4
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.8e-169 598.2 421 78.9
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.4e-168 595.9 420 82.1
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 3.1e-168 595.5 415 79.3
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 4.1e-168 595.1 418 79.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.7e-166 589.7 418 81.8
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.2e-166 589.3 421 83.1
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 2.2e-166 589.3 417 80.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 5.0e-166 588.2 416 82.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 5.0e-166 588.2 419 77.8
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 3.2e-165 585.5 422 82.5
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 4.2e-165 585.1 417 78.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 9.5e-165 583.9 417 81.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.6e-164 583.2 419 82.1
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.1e-164 582.8 427 80.3
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 3.6e-164 582.0 417 81.5
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.4e-163 580.1 423 77.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.8e-163 579.7 418 80.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 6.8e-163 577.8 416 77.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 8.8e-163 577.4 423 77.1
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 4.4e-162 575.1 430 78.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 9.8e-162 573.9 430 77.9
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.7e-161 573.2 430 78.1
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.2e-161 572.8 419 80.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.8e-161 572.4 418 81.6
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 4.9e-161 571.6 418 73.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.1e-160 570.5 418 81.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.4e-160 569.3 425 79.8
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 9.2e-160 567.4 415 72.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 9.2e-160 567.4 421 79.6
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.2e-159 567.0 418 78.5
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 2.0e-159 566.2 427 78.2
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.0e-159 566.2 420 72.1
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.7e-159 565.8 414 72.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 5.9e-159 564.7 417 80.1
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.9e-157 559.7 418 75.1
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.9e-157 559.7 418 73.0
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.3e-157 558.9 417 78.2
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 1.2e-156 557.0 423 81.1
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.0e-155 552.4 424 77.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.0e-155 552.0 417 77.9
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 5.2e-155 551.6 416 79.6
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 7.5e-154 547.7 414 72.5
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.4e-152 542.7 414 70.8
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.3e-149 532.3 401 78.3
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.1e-148 529.6 426 73.9
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.1e-148 529.6 417 76.7
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.8e-147 526.6 398 76.6
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 3.1e-147 525.8 415 72.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 5.2e-147 525.0 422 71.8
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 5.2e-147 525.0 422 72.7
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 3.4e-146 522.3 415 70.4
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 4.1e-144 515.4 417 66.9
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 5.4e-144 515.0 396 77.0
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.0e-143 513.1 418 73.0
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 8.6e-142 507.7 420 66.2
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.5e-141 506.1 418 70.6
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-140 503.4 436 70.2
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.1e-139 500.7 417 65.2
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.8e-139 500.0 418 72.0
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 5.2e-139 498.4 423 70.9
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.4e-138 495.7 417 65.5
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 4.4e-138 495.4 388 78.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 7.5e-138 494.6 427 70.3
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.9e-137 492.7 332 76.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.7e-137 492.3 417 66.4
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.7e-137 492.3 332 75.9
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.2e-135 487.3 417 64.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.1e-135 486.5 419 64.0
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 2.3e-134 483.0 325 76.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 6.6e-134 481.5 419 64.4
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 8.6e-134 481.1 322 77.0
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 8.6e-134 481.1 333 78.4
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 1.9e-133 479.9 333 78.7
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.3e-133 479.2 333 78.4
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 9.5e-133 477.6 423 65.7
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 6.2e-132 474.9 333 77.8
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.4e-131 473.8 420 60.0
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.4e-130 468.8 427 68.1
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 9.9e-130 467.6 415 62.2
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 7.1e-128 461.5 412 61.7
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 1.6e-127 460.3 442 64.5
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.9e-125 453.4 419 60.4
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.3e-125 452.2 417 60.7
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.2e-124 450.7 412 60.4
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.1e-124 449.9 417 61.2
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 2.8e-124 449.5 398 64.1
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.8e-124 449.5 439 64.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.4e-123 446.4 422 61.1
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 7.1e-120 434.9 393 60.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 3.2e-112 409.5 394 58.6
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.6e-111 405.6 377 59.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 4.3e-109 399.1 377 58.6
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.9e-105 386.3 423 53.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.4e-104 384.0 452 58.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.2e-103 380.9 223 84.3
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.1e-103 380.2 288 73.6
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.8e-102 377.1 415 56.6
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.1e-99 367.9 416 54.6
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.9e-96 357.1 441 55.3
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 7.6e-90 335.1 294 63.6
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 3.2e-88 329.7 282 75.2
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.4e-83 313.5 271 60.5
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 3.6e-79 299.7 281 60.5
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 4.4e-77 292.7 160 90.6
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 4.8e-76 289.3 352 49.7
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.5e-74 284.3 168 83.9
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 1.0e-73 281.6 340 47.9
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.4e-67 261.2 239 60.7
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 2.1e-63 247.3 139 89.9
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-57 227.6 159 70.4
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 6.1e-55 219.2 114 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 9.8e-53 211.8 168 64.9
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 9.5e-48 195.3 116 85.3
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.8e-46 191.0 159 62.3
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 4.4e-45 186.4 125 75.2
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.0e-43 179.1 283 43.8
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 4.3e-40 169.9 156 53.2
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 6.8e-38 162.5 254 40.2
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.8e-35 154.5 411 34.1
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.9e-27 127.9 114 59.6
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.2e-27 127.1 64 92.2
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 5.4e-27 126.3 154 48.7
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.2e-27 125.6 64 90.6
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.2e-27 125.6 64 90.6
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 2.7e-26 124.0 141 63.1
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.5e-26 123.6 170 45.3
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.6e-26 123.2 64 89.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.1e-24 118.6 79 73.4
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.6e-23 114.8 97 61.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 2.8e-23 114.0 68 80.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 6.8e-22 109.4 66 78.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 6.8e-22 109.4 68 77.9
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.4e-19 100.9 162 42.6
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.5e-16 90.9 108 49.1
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 5.1e-09 66.6 47 66.0
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 5.1e-09 66.6 47 66.0
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 6.6e-09 66.2 49 69.4


User provided reference genes

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