Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G077500 Carya illinoinensis HOM05D003126 ORTHO05D010530 6.8e-90 334.0 166 100.0
Haze_18439 Corylus avellana HOM05D003126 ORTHO05D010530 7.1e-47 191.0 148 66.9
Cfa017786 Carpinus fangiana HOM05D003126 ORTHO05D010530 2.5e-44 182.6 142 65.5
QL06p053594 Quercus lobata HOM05D003126 ORTHO05D010530 5.1e-37 158.3 149 58.4
CSS0018782 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D010530 1.6e-27 126.7 110 60.9
Actinidia25729 Actinidia chinensis HOM05D003126 ORTHO05D010530 1.4e-26 123.6 134 50.7
Prupe.3G017800 Prunus persica HOM05D003126 ORTHO05D010530 5.8e-25 118.2 90 62.2
MD17G1145400 Malus domestica HOM05D003126 ORTHO05D010530 3.8e-24 115.5 106 53.8
FAN09G1633 Fragaria x ananassa HOM05D003126 ORTHO05D010530 8.4e-24 114.4 80 67.5
Hma1.2p1_1382F.1_g279410 Hydrangea macrophylla HOM05D003126 ORTHO05D010530 1.4e-23 113.6 131 48.9
RcHm_v2.0_Chr2g0150031 Rosa chinensis HOM05D003126 ORTHO05D010530 1.4e-23 113.6 84 66.7
CDE07G0165 Ceratophyllum demersum HOM05D003126 ORTHO05D010530 3.2e-23 112.5 108 50.9
FAN14G4997 Fragaria x ananassa HOM05D003126 ORTHO05D010530 5.5e-23 111.7 80 67.5
Nn8g41232 Nelumbo nucifera HOM05D003126 ORTHO05D010530 5.5e-23 111.7 87 62.1
FvH4_6g37250 Fragaria vesca HOM05D003126 ORTHO05D010530 1.2e-22 110.5 80 66.2
MBI16_g00828_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D010530 2.1e-22 109.8 81 63.0
TAR383G0388 Trochodendron aralioides HOM05D003126 ORTHO05D010530 2.1e-22 109.8 101 55.4
Atru.chr7.2706 Acer truncatum HOM05D003126 ORTHO05D010530 2.7e-22 109.4 80 65.0
CANSAT01G1393 Cannabis sativa HOM05D003126 ORTHO05D010530 7.9e-22 107.8 86 57.0
PSO063G2008 Papaver somniferum HOM05D003126 ORTHO05D010530 1.0e-21 107.5 101 53.5
PSO170G0504 Papaver somniferum HOM05D003126 ORTHO05D010530 1.3e-21 107.1 97 55.7
Rhsim03G0058300 Rhododendron simsii HOM05D003126 ORTHO05D010530 1.3e-21 107.1 107 57.9
Aqoxy7G02661 Aquilegia oxysepala HOM05D003126 ORTHO05D010530 8.7e-21 104.4 87 56.3
Potri.012G145100 Populus trichocarpa HOM05D003126 ORTHO05D010530 8.7e-21 104.4 101 56.4
Hund19380 Selenicereus undatus HOM05D003126 ORTHO05D010530 3.3e-20 102.4 81 58.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 5.7e-20 101.7 76 64.5
HPP92_010335 Vanilla planifolia HOM05D003126 ORTHO05D010530 1.1e-18 97.4 123 41.5
Os04g0306800 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 1.8e-18 96.7 78 52.6
SEGI_13274 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 1.0e-16 90.9 145 35.9
Carub.0004s0368 Capsella rubella HOM05D003126 ORTHO05D010530 2.2e-16 89.7 74 59.5
ATR0626G022 Amborella trichopoda HOM05D003126 ORTHO05D010530 3.8e-16 89.0 102 49.0
CARHR117720 Cardamine hirsuta HOM05D003126 ORTHO05D010530 3.2e-15 85.9 95 48.4
AT2G24350 Arabidopsis thaliana HOM05D003126 ORTHO05D010530 4.6e-14 82.0 82 53.7
AL4G14744 Arabidopsis lyrata HOM05D003126 ORTHO05D010530 7.9e-14 81.3 82 51.2
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 1.4e-13 80.5 116 34.5
vmacro07518 Vaccinium macrocarpon HOM05D003126 ORTHO05D010530 1.4e-13 80.5 179 31.3
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 2.3e-13 79.7 72 48.6
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 3.0e-13 79.3 73 45.2
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 3.9e-13 79.0 75 44.0
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 3.9e-13 79.0 72 48.6
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 3.9e-13 79.0 73 45.2
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 6.7e-13 78.2 73 45.2
Thhalv10000139m.g Eutrema salsugineum HOM05D003126 ORTHO05D010530 6.7e-13 78.2 79 53.2
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 8.8e-13 77.8 73 45.2
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 8.8e-13 77.8 134 35.8
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 1.1e-12 77.4 73 45.2
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 1.1e-12 77.4 72 47.2
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 1.1e-12 77.4 102 38.2
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 1.1e-12 77.4 72 47.2
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.1e-12 77.4 75 42.7
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 1.5e-12 77.0 73 43.8
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 2.0e-12 76.6 73 42.5
Mapoly0177s0019 Marchantia polymorpha HOM05D003126 ORTHO05D005034 2.0e-12 76.6 75 45.3
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 2.0e-12 76.6 73 43.8
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 2.5e-12 76.3 73 43.8
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 44.0
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 2.5e-12 76.3 73 43.8
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 42.7
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 42.7
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 42.7
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 41.3
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 2.5e-12 76.3 75 45.3
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 3.3e-12 75.9 75 42.7
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 3.3e-12 75.9 73 45.2
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 4.3e-12 75.5 133 33.1
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 4.3e-12 75.5 75 42.7
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 4.3e-12 75.5 75 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3410 Anthoceros agrestis HOM05D003126 ORTHO05D005034 5.7e-12 75.1 92 37.0
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 5.7e-12 75.1 75 42.7
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 5.7e-12 75.1 99 36.4
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 5.7e-12 75.1 75 41.3
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 5.7e-12 75.1 75 41.3
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 5.7e-12 75.1 105 36.2
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 5.7e-12 75.1 136 32.4
Duzib168G1775 Durio zibethinus HOM05D003126 ORTHO05D010530 7.4e-12 74.7 157 36.3
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 7.4e-12 74.7 75 42.7
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 7.4e-12 74.7 75 42.7
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 7.4e-12 74.7 75 42.7
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 7.4e-12 74.7 75 42.7
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 7.4e-12 74.7 75 42.7
AUR62020663 Chenopodium quinoa HOM05D003126 ORTHO05D010530 9.7e-12 74.3 63 55.6
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 9.7e-12 74.3 128 29.7
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 9.7e-12 74.3 75 38.7
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 9.7e-12 74.3 73 41.1
Aa31LG7G12400 Aethionema arabicum HOM05D003126 ORTHO05D010530 1.3e-11 73.9 76 51.3
Cpa.g.sc1688.1 Carica papaya HOM05D003126 ORTHO05D005034 1.3e-11 73.9 75 41.3
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 1.3e-11 73.9 75 44.0
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 1.3e-11 73.9 75 44.0
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.3e-11 73.9 75 42.7
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 1.3e-11 73.9 73 42.5
SMO116G0171 Selaginella moellendorffii HOM05D003126 ORTHO05D005034 1.3e-11 73.9 73 43.8
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 1.3e-11 73.9 73 43.8
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 1.7e-11 73.6 75 41.3
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.7e-11 73.6 74 44.6
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.7e-11 73.6 74 44.6
GSVIVG01035585001 Vitis vinifera HOM05D003126 ORTHO05D010530 1.7e-11 73.6 64 54.7
AUR62028067 Chenopodium quinoa HOM05D003126 ORTHO05D010530 2.2e-11 73.2 45 73.3
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 2.2e-11 73.2 112 37.5
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 2.2e-11 73.2 73 42.5
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 2.2e-11 73.2 75 42.7
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 2.2e-11 73.2 72 41.7
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 2.8e-11 72.8 75 41.3
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 2.8e-11 72.8 73 42.5
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 2.8e-11 72.8 75 42.7
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 2.8e-11 72.8 101 35.6
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 3.7e-11 72.4 73 41.1
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 3.7e-11 72.4 73 41.1
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 3.7e-11 72.4 137 32.1
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 3.7e-11 72.4 72 41.7
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 3.7e-11 72.4 73 41.1
Zm00001eb424740 Zea mays HOM05D003126 ORTHO05D005034 3.7e-11 72.4 75 42.7
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 4.8e-11 72.0 73 41.1
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 4.8e-11 72.0 133 32.3
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 4.8e-11 72.0 73 39.7
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 4.8e-11 72.0 75 40.0
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 6.3e-11 71.6 73 41.1
Dinv09367 Davidia involucrata HOM05D003126 ORTHO05D005034 6.3e-11 71.6 92 37.0
Gorai.009G009200 Gossypium raimondii HOM05D003126 ORTHO05D010530 6.3e-11 71.6 156 34.0
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 8.2e-11 71.2 75 38.7
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 8.2e-11 71.2 75 40.0
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 8.2e-11 71.2 121 31.4
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 1.1e-10 70.9 132 32.6
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 1.4e-10 70.5 77 40.3
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 1.8e-10 70.1 73 42.5
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 1.8e-10 70.1 75 40.0
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 2.4e-10 69.7 136 30.9
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 3.1e-10 69.3 73 41.1
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 4.1e-10 68.9 75 38.7
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 4.1e-10 68.9 73 39.7
Thecc.09G153400 Theobroma cacao HOM05D003126 ORTHO05D010530 4.1e-10 68.9 117 40.2
BraA04t17475Z Brassica rapa HOM05D003126 ORTHO05D010530 5.3e-10 68.6 84 42.9
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 9.1e-10 67.8 75 42.7
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 9.1e-10 67.8 113 32.7
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 9.1e-10 67.8 136 28.7
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 9.1e-10 67.8 75 37.3
AL3G24310 Arabidopsis lyrata HOM05D003126 ORTHO05D005034 1.2e-09 67.4 66 43.9
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 1.2e-09 67.4 66 42.4
Gohir.A05G008200 Gossypium hirsutum HOM05D003126 ORTHO05D010530 1.2e-09 67.4 159 34.6
Pp3c3_23400 Physcomitrium patens HOM05D003126 ORTHO05D005034 1.2e-09 67.4 73 38.4
Sp3g10780 Schrenkiella parvula HOM05D003126 ORTHO05D005034 2.0e-09 66.6 73 39.7
TPR.G28465 Trifolium pratense HOM05D003126 ORTHO05D005034 2.0e-09 66.6 136 28.7
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 2.0e-09 66.6 74 39.2
CBR_g472 Chara braunii HOM05D003126 ORTHO05D001316 2.6e-09 66.2 59 47.5
Psat4g148400 Pisum sativum HOM05D003126 ORTHO05D005034 2.6e-09 66.2 73 38.4
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 3.4e-09 65.9 109 32.1
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 3.4e-09 65.9 145 29.7
BcaB04g18712 Brassica carinata HOM05D003126 ORTHO05D005034 4.5e-09 65.5 66 40.9
BcaC01g04024 Brassica carinata HOM05D003126 ORTHO05D005034 4.5e-09 65.5 61 42.6
A03p37730 Brassica napus HOM05D003126 ORTHO05D005034 5.9e-09 65.1 66 40.9
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 5.9e-09 65.1 61 42.6
BolC1t05192H Brassica oleracea HOM05D003126 ORTHO05D005034 5.9e-09 65.1 61 42.6
BraA03t12928Z Brassica rapa HOM05D003126 ORTHO05D005034 5.9e-09 65.1 66 40.9
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 5.9e-09 65.1 74 39.2
Sp4g03350 Schrenkiella parvula HOM05D003126 ORTHO05D010530 5.9e-09 65.1 171 33.3
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 7.7e-09 64.7 61 42.6
C03p45780 Brassica napus HOM05D003126 ORTHO05D005034 7.7e-09 64.7 61 42.6
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 1.0e-08 64.3 61 44.3
Pp3c10_12150 Physcomitrium patens HOM05D003126 ORTHO05D005034 1.0e-08 64.3 73 39.7
Thhalv10020251m.g Eutrema salsugineum HOM05D003126 ORTHO05D005034 1.3e-08 63.9 73 38.4
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 1.7e-08 63.5 123 29.3
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 1.7e-08 63.5 123 29.3
Medtr8g037000 Medicago truncatula HOM05D003126 ORTHO05D005034 2.2e-08 63.2 73 39.7
Potri.006G079800 Populus trichocarpa HOM05D003126 ORTHO05D010530 2.2e-08 63.2 88 45.5
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 5.0e-08 62.0 75 40.0
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 1.1e-07 60.8 75 36.0
BolC3t16853H Brassica oleracea HOM05D003126 ORTHO05D005034 2.5e-07 59.7 65 40.0
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 2.5e-07 59.7 74 35.1
EL10Ac2g04311 Beta vulgaris HOM05D003126 ORTHO05D005034 4.2e-07 58.9 79 36.7
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 7.2e-07 58.2 139 25.2
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 9.4e-07 57.8 60 41.7
COL.COLO4_05708 Corchorus olitorius HOM05D003126 ORTHO05D010530 1.2e-06 57.4 150 33.3
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 1.2e-06 57.4 76 35.5
Sabra06G0060400 Salix brachista HOM05D000412 ORTHO05D000429 1.2e-06 57.4 100 37.0
CARHR087150 Cardamine hirsuta HOM05D003126 ORTHO05D005034 2.1e-06 56.6 105 29.5
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 7.9e-06 54.7 73 35.6


User provided reference genes

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