Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1324.3 675 100.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1197.2 675 89.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1194.5 674 89.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1189.1 671 88.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1185.6 671 88.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1185.2 674 88.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1184.9 671 88.1
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1177.2 672 87.9
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1169.5 666 87.5
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1169.5 671 87.6
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1169.1 672 86.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1166.4 672 86.9
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1166.4 671 87.2
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1163.7 666 87.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1163.7 666 87.4
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1162.9 666 87.2
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1161.7 666 87.2
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1161.7 674 86.2
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 672 86.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1152.5 672 86.3
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1151.7 673 85.1
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1150.6 669 86.7
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1149.0 669 86.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1148.7 672 84.5
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1148.7 672 85.7
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 669 86.2
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1145.2 675 86.7
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1142.9 667 85.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1142.5 672 84.8
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1139.4 669 84.6
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1135.9 672 84.8
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1135.9 669 85.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 691 83.4
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 700 82.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 675 84.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1127.5 707 81.5
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1119.8 672 83.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 674 82.6
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 678 83.3
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 647 86.6
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 647 86.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1118.6 660 84.5
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 664 83.6
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1117.1 668 84.1
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 673 83.4
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1113.2 659 84.8
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1112.8 661 83.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 661 83.7
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1112.1 672 82.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1111.7 672 82.1
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1110.9 680 82.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 659 83.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 673 82.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1109.0 675 82.8
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1104.7 661 83.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 662 83.2
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 674 81.3
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 689 81.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 644 85.9
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1098.6 671 82.3
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 661 82.9
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 665 82.1
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 662 82.8
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1095.5 665 82.0
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 689 80.7
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1087.0 665 81.7
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 665 81.7
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 669 81.3
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 671 80.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1080.9 679 80.4
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 673 81.4
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 687 79.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 696 77.9
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.9e-308 1062.0 756 74.3
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.2e-307 1059.3 672 78.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 8.1e-307 1056.6 725 75.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 4.9e-304 1047.3 646 78.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 3.0e-301 1038.1 642 80.1
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.9e-298 1026.5 696 76.4
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.3e-296 1022.7 673 78.3
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.7e-293 1012.3 645 80.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 9.6e-284 979.9 672 75.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.0e-281 972.2 579 83.2
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 4.2e-279 964.5 672 74.3
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 5.4e-279 964.1 595 81.5
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.3e-276 954.9 670 71.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 2.4e-274 948.7 590 80.3
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 4.9e-272 941.0 647 71.4
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 9.6e-268 926.8 668 73.5
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.8e-267 925.2 667 69.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 4.8e-267 924.5 651 70.8
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 7.1e-263 910.6 654 72.9
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.7e-262 908.7 634 74.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.9e-261 904.8 664 67.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.7e-259 898.3 509 86.2
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.2e-256 889.0 698 67.5
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-252 875.9 698 66.9
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.6e-233 813.1 443 90.1
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 5.0e-216 755.0 462 78.6
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.5e-199 699.5 689 53.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 5.8e-188 661.8 374 89.8
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.0e-181 639.0 382 80.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-180 634.8 549 61.4
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.2e-177 627.5 389 81.5
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.1e-175 620.9 366 84.7
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 3.3e-175 619.4 676 50.3
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 4.3e-175 619.0 665 51.0
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.1e-173 612.8 387 80.6
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 3.3e-151 539.7 304 87.8
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 2.4e-141 506.9 367 72.8
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-140 501.9 644 47.8
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.6e-137 494.2 306 79.4
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.6e-137 494.2 305 80.3
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 4.7e-121 439.5 296 76.7
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 3.6e-113 413.3 474 50.0
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 5.4e-85 319.7 214 76.6
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 9.5e-82 308.9 215 71.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.5e-71 275.0 174 80.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 2.4e-56 224.6 234 56.8
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.7e-54 218.4 247 51.8
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.9e-54 217.6 218 58.3
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.5e-50 205.3 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 3.6e-49 200.7 148 64.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-41 175.3 415 33.5
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-35 154.5 150 57.3
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.5e-34 151.4 87 83.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 3.3e-34 151.0 87 83.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-33 147.9 87 82.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.8e-33 147.1 86 87.2
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.2e-33 146.7 546 31.9
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 2.2e-30 138.3 98 69.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 7.9e-28 129.8 86 75.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.8e-24 118.6 132 50.8
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 77.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 77.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.0e-19 102.8 82 68.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 8.8e-19 99.8 55 87.3
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.5e-18 99.0 54 88.9
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.4e-16 91.7 82 63.4
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.9e-15 87.0 96 54.2
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 85.7
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 85.7
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-14 85.1 201 33.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.5e-13 81.6 68 54.4
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 4.2e-13 80.9 98 52.0
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.7e-12 77.4 63 68.3
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.6e-10 71.6 67 58.2
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.7e-09 67.8 43 74.4
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 6.3e-09 67.0 105 42.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 7.0e-08 63.5 43 67.4
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.9e-06 58.2 33 84.8


User provided reference genes

Program Settings