Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 5.6e-33 143.7 72 100.0
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 4.9e-29 130.6 71 90.1
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 6.5e-29 130.2 72 88.9
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 8.4e-29 129.8 71 87.3
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.1e-28 129.4 71 88.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 1.4e-28 129.0 71 87.3
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.4e-28 129.0 69 92.8
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 2.5e-28 128.3 71 87.3
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 3.2e-28 127.9 71 87.3
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 3.2e-28 127.9 71 85.9
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 1.6e-27 125.6 71 83.1
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 2.1e-27 125.2 71 87.3
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 3.5e-27 124.4 71 81.7
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 4.6e-27 124.0 71 84.5
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 85.9
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 6.0e-27 123.6 71 85.9
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 7.9e-27 123.2 71 85.9
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.0e-26 122.9 71 84.5
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.0e-26 122.9 71 83.1
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 1.3e-26 122.5 71 83.1
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.3e-26 122.5 69 84.1
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.8e-26 122.1 71 84.5
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 83.1
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 83.1
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 83.1
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 80.3
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 2.3e-26 121.7 71 81.7
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 3.0e-26 121.3 71 81.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 3.0e-26 121.3 71 80.3
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 83.1
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 83.1
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 81.7
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 81.7
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 5.1e-26 120.6 71 78.9
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 6.7e-26 120.2 71 78.9
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 8.7e-26 119.8 71 78.9
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 8.7e-26 119.8 71 78.9
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 1.5e-25 119.0 71 78.9
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.9e-25 118.6 72 81.9
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.9e-25 118.6 71 78.9
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 1.9e-25 118.6 71 78.9
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 2.5e-25 118.2 69 81.2
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.5e-25 118.2 72 80.6
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 3.3e-25 117.9 69 81.2
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 4.3e-25 117.5 70 77.1
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 5.7e-25 117.1 70 75.7
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 1.3e-24 115.9 71 76.1
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 2.1e-24 115.2 71 74.6
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 2.8e-24 114.8 70 72.9
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 2.8e-24 114.8 69 76.8
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 3.7e-24 114.4 71 77.5
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 3.7e-24 114.4 71 74.6
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 3.7e-24 114.4 71 74.6
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 3.7e-24 114.4 71 76.1
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.7e-24 114.4 72 80.6
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 3.7e-24 114.4 71 76.1
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 4.8e-24 114.0 71 76.1
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 4.8e-24 114.0 71 76.1
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 4.8e-24 114.0 71 76.1
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 4.8e-24 114.0 71 74.6
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 73.2
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 71.8
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 74.6
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 74.6
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 74.6
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 74.6
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 74.6
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.4e-23 111.7 71 81.7
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 3.1e-23 111.3 69 73.9
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 6.9e-23 110.2 71 71.8
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 2.0e-22 108.6 71 73.2
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 5.8e-22 107.1 71 69.0
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.2e-21 105.1 72 69.4
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 2.2e-21 105.1 72 69.4
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 2.2e-21 105.1 71 74.6
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 3.8e-21 104.4 72 69.4
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 5.0e-21 104.0 66 71.2
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 8.4e-21 103.2 63 81.0
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.9e-20 102.1 71 73.2
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.9e-20 102.1 71 73.2
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 4.2e-20 100.9 59 81.4
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 5.5e-20 100.5 69 60.9
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 5.5e-20 100.5 57 84.2
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 7.1e-20 100.1 59 83.1
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 9.3e-20 99.8 69 66.7
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.6e-19 99.0 59 78.0
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 1.6e-19 99.0 59 81.4
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 4.6e-19 97.4 64 71.9
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 4.6e-19 97.4 63 76.2
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 4.6e-19 97.4 59 76.3
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 6.1e-19 97.1 64 71.9
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.1e-19 97.1 63 73.0
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.3e-18 95.9 69 58.0
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 1.8e-18 95.5 61 72.1
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.0e-18 94.7 69 66.7
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.9e-18 94.4 70 70.0
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 3.9e-18 94.4 60 80.0
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 3.9e-18 94.4 56 82.1
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 8.7e-18 93.2 59 76.3
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 8.7e-18 93.2 59 76.3
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 1.5e-17 92.4 71 60.6
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.3e-17 91.3 70 65.7
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 4.3e-17 90.9 57 70.2
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 1.6e-16 89.0 69 65.2
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 2.8e-16 88.2 70 61.4
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 4.8e-16 87.4 61 70.5
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 2.4e-15 85.1 57 66.7
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 2.4e-15 85.1 54 72.2
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 5.3e-15 84.0 73 58.9
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 6.9e-15 83.6 71 62.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 3.4e-14 81.3 70 48.6
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.0e-13 79.7 61 63.9
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 2.7e-11 71.6 56 60.7
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 1.0e-10 69.7 49 73.5
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.1e-09 66.2 83 47.0
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 1.5e-09 65.9 40 70.0
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 1.1e-07 59.7 70 37.1


User provided reference genes

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