Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 0.0e+00 1229.5 639 100.0
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.6e-219 766.5 1076 46.6
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 1.7e-210 736.5 1085 44.4
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.5e-201 706.8 1071 43.6
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 3.5e-195 685.6 1130 41.3
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 6.5e-173 611.7 1086 38.7
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 3.2e-172 609.4 1079 39.0
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 3.6e-171 605.9 1082 39.0
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 4.6e-171 605.5 1091 38.7
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 1.0e-170 604.4 1085 38.2
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 3.9e-170 602.4 1091 38.7
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 3.9e-170 602.4 1077 38.8
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 1.7e-165 587.0 1088 37.2
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.9e-165 586.3 1078 38.3
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.5e-164 583.2 1082 37.4
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 9.4e-164 581.3 1076 38.2
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.7e-163 579.7 1082 38.0
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 1.8e-162 577.0 1067 37.2
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 2.3e-162 576.6 1072 38.7
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 2.0e-161 573.5 1086 37.8
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 4.4e-161 572.4 1068 36.8
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 5.7e-161 572.0 1090 36.5
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.3e-160 570.9 1088 36.7
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 3.1e-159 566.2 1076 36.9
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 2.6e-158 563.1 1078 36.4
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 3.8e-157 559.3 1047 38.5
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 2.1e-155 553.5 1086 36.6
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 2.1e-155 553.5 1089 37.2
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 6.1e-155 552.0 1110 36.7
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 1.0e-154 551.2 1075 36.6
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.8e-154 550.4 1077 35.8
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 8.8e-154 548.1 1073 36.1
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.3e-152 544.3 1082 36.2
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 1.3e-152 544.3 1078 35.9
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.7e-152 543.9 1077 35.7
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.1e-151 541.2 1082 36.1
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.8e-151 540.4 1081 35.7
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.8e-151 540.4 1083 36.1
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.4e-151 540.0 1083 36.1
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 3.5e-150 536.2 1092 36.2
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 4.5e-150 535.8 1089 36.5
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 2.9e-149 533.1 1109 34.2
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 8.5e-149 531.6 1111 35.4
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 1.5e-148 530.8 1079 36.0
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 7.2e-148 528.5 1091 35.5
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 8.0e-147 525.0 1062 35.9
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 1.3e-144 517.7 1080 35.4
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 8.3e-144 515.0 1085 33.9
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 2.4e-143 513.5 1040 36.2
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 4.1e-143 512.7 1077 34.4
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.3e-141 507.7 1073 34.5
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 8.5e-141 505.0 1074 34.2
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 3.2e-140 503.1 1065 34.1
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 3.2e-140 503.1 1049 36.0
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 4.7e-139 499.2 1084 34.3
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 1.8e-138 497.3 1086 34.3
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 1.8e-138 497.3 1081 34.0
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 3.4e-137 493.0 1101 34.1
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 7.5e-137 491.9 1083 33.9
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.3e-136 491.1 1087 34.2
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.7e-136 490.7 441 60.8
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 2.7e-134 483.4 1087 33.6
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 4.5e-134 482.6 1086 34.0
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 5.9e-134 482.3 442 60.0
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 5.9e-134 482.3 1040 33.9
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 1.7e-133 480.7 1099 33.1
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 1.7e-133 480.7 1086 33.8
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 2.3e-133 480.3 1071 33.5
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.3e-133 480.3 1057 33.8
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 2.9e-133 479.9 1087 33.3
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.9e-132 477.2 1068 33.0
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.3e-132 476.5 1068 33.1
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 9.5e-132 474.9 1062 32.9
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.6e-131 473.0 1076 33.6
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 5.2e-130 469.2 1083 33.0
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 5.2e-130 469.2 1083 33.0
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 5.2e-130 469.2 436 60.6
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 1.2e-129 468.0 1132 32.3
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 5.7e-129 465.7 1085 33.8
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 2.2e-128 463.8 1086 32.6
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 6.4e-128 462.2 1010 35.0
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 8.3e-128 461.8 1016 33.7
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 9.2e-127 458.4 1089 32.7
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 1.6e-126 457.6 1074 33.9
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 2.0e-126 457.2 1097 32.4
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 2.7e-126 456.8 1089 32.5
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 5.9e-126 455.7 1070 33.6
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 5.6e-124 449.1 1051 32.1
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 1.2e-123 448.0 1082 33.5
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 6.2e-123 445.7 1081 33.5
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.1e-122 443.4 405 60.0
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.2e-121 441.4 346 66.2
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 5.8e-121 439.1 1070 33.0
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 2.2e-120 437.2 1057 32.6
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 3.2e-119 433.3 1040 32.6
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 5.4e-119 432.6 1149 31.2
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 7.0e-119 432.2 1060 31.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 5.0e-117 426.0 1074 30.9
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.8e-115 420.2 1100 31.5
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.6e-115 419.9 1046 32.6
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 8.9e-114 415.2 391 57.5
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 2.9e-112 410.2 420 55.0
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.9e-112 410.2 419 54.2
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 1.4e-106 391.3 994 31.7
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 5.2e-106 389.4 1081 31.4
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 2.6e-105 387.1 445 51.2
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 3.8e-104 383.3 445 50.3
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 3.0e-101 373.6 448 47.1
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.7e-96 357.8 278 68.3
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 5.4e-95 352.8 435 48.5
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 1.3e-93 348.2 704 36.9
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 8.4e-88 328.9 332 52.7
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.7e-86 323.9 1035 29.6
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 3.4e-81 307.0 899 28.6
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 4.5e-81 306.6 276 59.1
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 2.9e-80 303.9 479 39.2
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.9e-76 291.2 363 48.5
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.8e-74 284.6 682 33.0
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 1.4e-71 275.0 846 28.3
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 2.5e-71 274.2 192 74.0
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 7.9e-70 269.2 187 72.2
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 5.1e-69 266.5 296 47.0
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 5.7e-68 263.1 362 47.0
Sabra16G0064500 Salix brachista HOM05D003161 ORTHO05D005173 2.8e-67 260.8 222 64.4
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.2e-62 245.4 285 51.6
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.8e-58 231.5 346 43.1
MD14G1050200 Malus domestica HOM05D003161 ORTHO05D005173 2.0e-57 228.0 223 56.5
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 4.7e-54 216.9 227 53.3
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 6.3e-51 206.5 222 49.5
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 2.8e-43 181.0 282 37.9
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 8.2e-43 179.5 298 40.3
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 2.1e-38 164.9 440 29.5
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 4.7e-38 163.7 204 45.6
Gohir.D08G094800 Gossypium hirsutum HOM05D003161 ORTHO05D019240 3.4e-28 131.0 100 65.0
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 4.4e-28 130.6 148 52.0
Gorai.007G198500 Gossypium raimondii HOM05D003161 ORTHO05D019240 5.7e-28 130.2 98 64.3
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 1.1e-26 125.9 97 60.8
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.0e-25 121.7 107 60.7
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 4.2e-23 114.0 79 65.8
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 3.6e-22 110.9 221 36.2
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 1.3e-19 102.4 120 48.3
HPP92_015878 Vanilla planifolia HOM05D003161 ORTHO05D019240 8.3e-19 99.8 164 37.8
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.4e-18 98.2 91 54.9
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 1.6e-17 95.5 232 32.3
Gohir.D03G037600 Gossypium hirsutum HOM05D001706 ORTHO05D019240 1.1e-15 89.4 55 70.9
Gohir.D06G091175 Gossypium hirsutum HOM05D003161 ORTHO05D019240 1.1e-15 89.4 83 56.6
Gorai.011G237200 Gossypium raimondii HOM05D003161 ORTHO05D019240 1.1e-15 89.4 83 56.6
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.7e-11 74.3 83 49.4
Cfa014092 Carpinus fangiana HOM05D001714 ORTHO05D001932 3.9e-08 64.3 51 68.6
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.0e-08 63.9 47 59.6
Lsat_1_v5_gn_7_92520 Lactuca sativa HOM05D003161 ORTHO05D048398 4.7e-06 57.4 55 50.9
Gohir.D12G128000 Gossypium hirsutum HOM05D003161 ORTHO05D036035 6.2e-06 57.0 49 63.3
AL5G31530 Arabidopsis lyrata HOM05D001971 ORTHO05D003057 8.0e-06 56.6 263 20.9


User provided reference genes

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