Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 0.0e+00 1208.0 629 100.0
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.4e-204 716.1 651 63.6
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.7e-189 666.8 788 52.3
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.9e-181 638.6 616 61.0
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 8.1e-168 594.7 579 60.6
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 2.1e-131 473.8 596 50.0
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 6.3e-128 462.2 623 48.2
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.0e-122 444.9 621 45.6
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 6.9e-119 432.2 623 45.3
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 3.4e-118 429.9 623 45.1
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 9.4e-116 421.8 665 43.0
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 4.5e-110 402.9 658 44.8
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 7.7e-110 402.1 763 37.2
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.4e-108 397.9 634 44.3
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.5e-108 397.1 714 40.9
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 3.7e-104 383.3 647 43.0
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 7.0e-103 379.0 803 38.7
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.9e-100 370.9 802 37.2
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 5.5e-100 369.4 434 50.5
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.0e-98 363.6 646 41.2
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 8.8e-98 362.1 630 39.8
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 7.0e-95 352.4 636 40.3
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.2e-93 347.4 691 37.3
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 4.2e-92 343.2 678 37.8
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.8e-90 337.8 736 37.0
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 5.2e-90 336.3 715 36.1
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.2e-89 335.1 707 38.5
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 2.6e-89 334.0 634 36.8
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 2.6e-89 334.0 700 38.0
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 4.4e-89 333.2 635 38.6
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 6.3e-88 329.3 714 37.5
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 6.3e-88 329.3 713 36.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 3.1e-87 327.0 712 37.2
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 4.1e-87 326.6 635 38.0
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 4.1e-87 326.6 671 37.6
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.4e-87 326.2 712 37.6
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 7.0e-87 325.9 708 37.1
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 9.1e-87 325.5 659 37.9
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.0e-86 324.3 694 36.0
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.3e-85 321.6 659 37.5
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.3e-85 320.9 705 36.5
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.1e-84 318.5 692 35.5
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.5e-84 318.2 706 35.8
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.5e-84 316.2 707 36.2
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 6.1e-83 312.8 619 39.7
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 6.8e-82 309.3 702 36.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.2e-81 308.5 734 34.1
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.7e-80 304.7 691 34.9
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.8e-80 303.9 629 37.8
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 4.9e-80 303.1 707 35.4
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 8.3e-80 302.4 696 34.6
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 8.3e-80 302.4 683 36.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 8.3e-80 302.4 680 34.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.8e-79 301.2 723 34.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.7e-77 294.7 709 34.0
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 8.6e-77 292.4 675 33.8
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 4.3e-76 290.0 705 34.2
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 7.3e-76 289.3 719 31.6
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.1e-75 287.7 734 33.0
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 3.6e-75 287.0 681 35.5
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 4.7e-75 286.6 810 32.0
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.0e-74 285.4 705 32.5
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 6.8e-74 282.7 735 33.6
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 6.8e-74 282.7 735 32.5
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.2e-73 282.0 803 32.0
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.0e-73 281.2 770 33.8
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.7e-72 276.9 781 31.5
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 8.3e-72 275.8 615 35.6
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.8e-71 274.6 715 34.5
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.6e-70 271.6 338 47.0
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.0e-69 266.5 807 31.6
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.9e-68 264.6 778 32.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.3e-68 263.8 492 39.2
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.6e-67 261.5 657 33.6
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 2.8e-67 260.8 527 38.1
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.1e-66 258.8 751 32.1
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 7.5e-65 252.7 742 32.1
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.0e-63 246.1 625 34.6
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 9.2e-63 245.7 435 40.5
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 1.6e-62 245.0 811 30.6
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 4.6e-62 243.4 423 40.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.7e-61 241.5 426 40.4
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 3.0e-61 240.7 633 33.8
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 5.0e-61 240.0 754 30.6
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 8.6e-61 239.2 765 30.5
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.1e-60 238.8 733 30.6
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.5e-60 238.4 634 34.1
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 5.6e-60 236.5 763 30.1
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 7.3e-60 236.1 778 29.8
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 2.1e-59 234.6 641 30.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.9e-57 225.7 753 32.1
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 4.9e-56 223.4 635 31.3
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 4.9e-56 223.4 642 30.7
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 7.8e-54 216.1 625 30.9
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 7.8e-54 216.1 640 32.0
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 8.6e-53 212.6 273 45.8
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 8.9e-50 202.6 188 55.9
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 3.2e-47 194.1 221 48.9
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 6.9e-42 176.4 634 31.2
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 9.9e-41 172.6 322 39.4
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.9e-39 168.3 202 47.5
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 5.3e-34 150.2 205 45.9
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 1.0e-29 136.0 224 37.1
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 2.3e-29 134.8 137 56.2
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 5.1e-29 133.7 171 45.6
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 4.3e-28 130.6 484 30.0
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 5.6e-28 130.2 504 28.8
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 2.8e-27 127.9 93 69.9
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.4e-26 124.8 93 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 7.1e-23 113.2 187 39.0
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 4.8e-19 100.5 131 44.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 1.2e-17 95.9 500 28.2
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.8e-17 93.6 159 39.0
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 2.2e-16 91.7 306 31.4
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 9.3e-15 86.3 77 54.5
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.3e-15 86.3 193 34.2
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 8.7e-13 79.7 162 37.0
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.6e-11 75.5 147 34.7
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.1e-10 72.8 58 60.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 3.1e-10 71.2 78 53.8
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 5.0e-08 63.9 139 36.0
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 8.5e-08 63.2 183 26.8
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 1.4e-07 62.4 74 50.0
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 1.4e-07 62.4 74 50.0
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 2.7e-06 58.2 36 66.7


User provided reference genes

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