Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.6e-216 755.7 373 100.0
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.9e-169 599.4 372 81.2
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 1.9e-161 572.8 378 77.2
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.5e-158 563.1 373 75.9
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 8.2e-152 540.8 373 74.5
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 1.8e-151 539.7 373 74.5
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 2.4e-151 539.3 369 73.2
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 3.1e-151 538.9 379 73.1
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 6.9e-151 537.7 374 73.3
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 3.8e-149 531.9 370 72.4
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.5e-149 531.2 369 72.6
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 6.5e-149 531.2 383 71.8
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 8.5e-149 530.8 369 71.8
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 1.1e-148 530.4 362 74.6
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.4e-148 530.0 362 74.0
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.9e-148 529.6 370 71.6
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.7e-147 525.8 369 71.3
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 3.6e-147 525.4 371 73.0
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 7.9e-147 524.2 362 74.6
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.0e-145 519.6 405 66.4
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 2.6e-145 519.2 377 69.8
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 4.4e-145 518.5 477 59.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 4.4e-145 518.5 377 70.0
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 5.7e-145 518.1 370 70.3
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.7e-145 518.1 379 68.9
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 1.3e-144 516.9 368 71.5
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 1.7e-144 516.5 371 69.5
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.2e-144 516.2 365 72.3
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 2.8e-144 515.8 378 67.2
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 7.0e-143 511.1 367 72.2
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.6e-142 510.0 379 66.8
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 3.5e-142 508.8 370 69.5
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 4.5e-142 508.4 376 67.0
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 5.0e-141 505.0 375 66.4
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 8.5e-141 504.2 387 66.9
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 8.5e-141 504.2 370 67.8
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 7.2e-140 501.1 376 66.2
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 2.7e-139 499.2 344 71.5
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.0e-138 497.3 388 66.5
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.3e-138 496.1 357 69.5
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 3.0e-138 495.7 354 72.0
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 1.2e-137 493.8 377 67.6
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 3.3e-137 492.3 371 69.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 4.4e-137 491.9 363 68.9
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 5.7e-137 491.5 381 66.1
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 9.7e-137 490.7 366 68.9
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.3e-136 490.3 374 67.6
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 6.3e-136 488.0 358 67.6
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 8.2e-136 487.6 365 67.7
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 1.1e-135 487.3 379 66.2
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.4e-135 486.9 381 66.9
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 3.1e-135 485.7 371 65.8
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 1.6e-134 483.4 345 72.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.6e-134 483.4 380 65.8
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.0e-134 483.0 379 66.0
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 2.7e-134 482.6 371 65.5
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 5.9e-134 481.5 372 65.6
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 5.9e-134 481.5 381 65.4
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 5.9e-134 481.5 376 67.6
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 7.7e-134 481.1 319 73.0
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.2e-133 479.6 369 68.0
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 5.0e-133 478.4 419 61.1
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 6.5e-133 478.0 358 67.0
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 8.5e-133 477.6 379 66.0
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 2.5e-132 476.1 369 65.9
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.2e-131 473.8 371 64.2
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 1.6e-131 473.4 386 64.8
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 3.6e-131 472.2 410 61.7
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 8.0e-131 471.1 363 66.4
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 1.0e-130 470.7 321 72.6
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.0e-130 470.7 378 65.6
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.4e-130 470.3 368 66.3
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 3.4e-129 465.7 321 71.3
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 3.4e-129 465.7 330 69.7
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 7.5e-129 464.5 359 66.3
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 7.5e-129 464.5 321 71.0
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.3e-128 463.8 330 69.4
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 2.8e-128 462.6 357 66.7
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 3.7e-128 462.2 363 65.6
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 1.2e-126 457.2 378 63.8
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 2.0e-126 456.4 364 66.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 2.0e-126 456.4 365 64.1
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 2.0e-126 456.4 365 64.1
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 7.7e-126 454.5 360 65.0
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 1.3e-125 453.8 332 70.5
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.9e-125 452.6 364 64.6
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 7.2e-124 448.0 324 69.1
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.8e-122 443.4 379 61.5
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.0e-122 442.2 323 68.1
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 2.6e-121 439.5 339 64.9
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 2.2e-120 436.4 338 67.2
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 2.2e-120 436.4 425 57.2
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.0e-117 427.6 329 66.0
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.0e-109 401.0 321 65.4
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.1e-108 397.5 318 65.7
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 1.8e-106 390.2 339 57.5
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 6.0e-102 375.2 370 57.0
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.1e-98 364.4 256 69.1
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 5.8e-97 358.6 375 52.8
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 7.1e-95 351.7 310 60.0
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.9e-92 343.6 277 63.5
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 7.3e-92 341.7 319 54.9
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 2.2e-80 303.5 450 40.2
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 7.1e-79 298.5 177 77.4
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 3.0e-77 293.1 222 66.2
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.6e-65 253.4 194 66.5
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.8e-64 249.6 182 68.1
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 1.8e-58 230.7 378 39.4
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 6.9e-58 228.8 168 69.6
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.8e-53 214.2 224 54.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 4.5e-41 172.9 155 58.7
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 7.7e-33 145.6 137 57.7
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.0e-32 145.2 77 84.4
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 8.8e-21 105.5 321 27.4
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.0e-20 104.4 209 32.5
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.5e-20 102.4 379 26.4
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.0e-16 92.0 205 29.3
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.3e-16 91.7 345 26.4
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 3.8e-16 90.1 348 25.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 3.8e-16 90.1 210 29.0
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 3.8e-16 90.1 212 30.7
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 6.5e-16 89.4 198 30.3
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.1e-15 88.6 334 25.1
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 1.1e-15 88.6 198 29.3
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 2.5e-15 87.4 202 30.2
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 5.5e-15 86.3 212 28.8
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 9.4e-15 85.5 206 29.6
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.2e-14 85.1 197 28.9
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 1.2e-14 85.1 201 28.9
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 2.1e-14 84.3 199 28.1
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 2.1e-14 84.3 210 28.6
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 2.7e-14 84.0 223 29.1
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 2.7e-14 84.0 174 32.2
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 3.6e-14 83.6 204 28.4
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 3.6e-14 83.6 204 28.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 3.6e-14 83.6 232 28.4
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 4.7e-14 83.2 184 31.0
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 4.7e-14 83.2 222 28.8
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 6.1e-14 82.8 198 28.3
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 6.1e-14 82.8 198 28.3
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 8.0e-14 82.4 239 26.8
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 8.0e-14 82.4 209 28.2
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.0e-13 82.0 174 29.3
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 1.0e-13 82.0 204 28.9
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 1.4e-13 81.6 200 28.5
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 1.4e-13 81.6 198 28.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 1.8e-13 81.3 222 28.4
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.3e-13 80.9 214 28.0
Psat4g021160 Pisum sativum HOM05D006708 ORTHO05D008321 2.3e-13 80.9 210 29.0
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 2.3e-13 80.9 212 28.3
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 4.0e-13 80.1 198 28.8
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 4.0e-13 80.1 198 28.8
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 4.0e-13 80.1 176 29.5
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.0e-13 80.1 176 29.5
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 4.0e-13 80.1 198 26.8
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 4.0e-13 80.1 198 26.8
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 5.2e-13 79.7 176 29.5
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 5.2e-13 79.7 204 28.9
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 6.8e-13 79.3 184 29.9
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 6.8e-13 79.3 184 29.9
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 8.8e-13 79.0 231 26.4
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 8.8e-13 79.0 198 27.8
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 8.8e-13 79.0 196 29.1
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 1.2e-12 78.6 231 25.5
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 2.0e-12 77.8 220 27.7
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 2.6e-12 77.4 177 31.1
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 2.6e-12 77.4 332 24.4
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 3.4e-12 77.0 184 28.8
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 3.4e-12 77.0 202 31.2
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 4.4e-12 76.6 198 27.3
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 5.7e-12 76.3 224 28.1
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 5.7e-12 76.3 198 27.3
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 7.5e-12 75.9 198 27.3
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 7.5e-12 75.9 198 26.3
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 1.7e-11 74.7 199 27.1
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 2.2e-11 74.3 203 31.0
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 2.2e-11 74.3 199 27.6
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 3.7e-11 73.6 222 29.3
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.8e-10 71.2 51 66.7
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 4.5e-09 66.6 203 26.6
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 1.3e-08 65.1 305 24.9
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 1.7e-08 64.7 175 30.3
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.1e-06 57.8 74 39.2


User provided reference genes

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