Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G144600 Carya illinoinensis HOM05D002001 ORTHO05D004100 8.4e-152 540.4 292 100.0
CiPaw.06G144400 Carya illinoinensis HOM05D002001 ORTHO05D004100 1.9e-127 459.5 239 99.2
Haze_01808 Corylus avellana HOM05D002001 ORTHO05D004100 4.5e-121 438.3 239 93.3
Haze_01809 Corylus avellana HOM05D002001 ORTHO05D004100 7.2e-119 431.0 239 92.5
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 6.1e-118 427.9 239 91.2
QL02p098463 Quercus lobata HOM05D002001 ORTHO05D004100 7.9e-118 427.6 239 91.2
MD08G1237400 Malus domestica HOM05D002001 ORTHO05D004100 2.1e-110 402.9 239 83.7
Thecc.02G090300 Theobroma cacao HOM05D002001 ORTHO05D004100 4.7e-110 401.7 239 84.9
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 3.0e-109 399.1 239 84.1
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 3.0e-109 399.1 239 84.1
COL.COLO4_11757 Corchorus olitorius HOM05D002001 ORTHO05D004100 3.9e-109 398.7 239 84.5
MELO3C027241.2 Cucumis melo HOM05D002001 ORTHO05D004100 1.1e-108 397.1 239 81.6
Prupe.1G574900 Prunus persica HOM05D002001 ORTHO05D004100 1.5e-108 396.7 239 82.0
Duzib132G0735 Durio zibethinus HOM05D002001 ORTHO05D004100 2.0e-108 396.4 239 84.1
Gohir.A13G036300 Gossypium hirsutum HOM05D002001 ORTHO05D004100 2.0e-108 396.4 239 83.7
CsaV3_5G029960 Cucumis sativus L. HOM05D002001 ORTHO05D004100 2.6e-108 396.0 239 81.2
Ciclev10000468m.g Citrus clementina HOM05D002001 ORTHO05D004100 3.3e-108 395.6 239 82.4
ClCG11G013430 Citrullus lanatus HOM05D002001 ORTHO05D004100 4.4e-108 395.2 239 81.2
CsaV3_5G029980 Cucumis sativus L. HOM05D002001 ORTHO05D004100 5.7e-108 394.8 239 80.8
Duzib052G0396 Durio zibethinus HOM05D002001 ORTHO05D004100 5.7e-108 394.8 239 83.3
CANSAT11G0528 Cannabis sativa HOM05D002001 ORTHO05D004100 1.3e-107 393.7 239 81.6
Sed0012035 Sechium edule HOM05D002001 ORTHO05D004100 1.3e-107 393.7 239 82.0
TAR629G1401 Trochodendron aralioides HOM05D002001 ORTHO05D004100 4.8e-107 391.7 239 82.0
Glyma.12G168900 Glycine max HOM05D002001 ORTHO05D004100 6.3e-107 391.3 239 81.6
Lj6g0014440 Lotus japonicus HOM05D002001 ORTHO05D004100 1.1e-106 390.6 239 79.1
Ciclev10000467m.g Citrus clementina HOM05D002001 ORTHO05D004100 1.4e-106 390.2 239 82.0
Eucgr.G00400 Eucalyptus grandis HOM05D002001 ORTHO05D004100 3.1e-106 389.0 239 81.2
Lalb_Chr20g0123631 Lupinus albus HOM05D002001 ORTHO05D004100 4.1e-106 388.7 239 78.7
Potri.017G076000 Populus trichocarpa HOM05D002001 ORTHO05D004100 5.3e-106 388.3 239 80.3
VMungo0540G2019 Vigna mungo HOM05D002001 ORTHO05D004100 5.3e-106 388.3 239 79.5
Ca_00055_v3 Cicer arietinum L. HOM05D002001 ORTHO05D004100 7.0e-106 387.9 239 79.1
Manes.10G123600 Manihot esculenta HOM05D002001 ORTHO05D004100 7.0e-106 387.9 239 79.9
Medtr2g006180 Medicago truncatula HOM05D002001 ORTHO05D004100 1.2e-105 387.1 239 79.5
PGR042G3798 Punica granatum HOM05D002001 ORTHO05D004100 1.6e-105 386.7 242 81.4
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 1.6e-105 386.7 239 79.1
Psat3g090080 Pisum sativum HOM05D002001 ORTHO05D004100 2.0e-105 386.3 239 77.8
Potri.017G076132 Populus trichocarpa HOM05D002001 ORTHO05D004100 2.0e-105 386.3 239 79.9
Phvul.006G217100 Phaseolus vulgaris HOM05D002001 ORTHO05D004100 2.6e-105 386.0 239 79.1
Prupe.1G574800 Prunus persica HOM05D002001 ORTHO05D004100 3.5e-105 385.6 239 79.9
Cpa.g.sc118.41 Carica papaya HOM05D002001 ORTHO05D004100 4.5e-105 385.2 239 78.7
Sabra17G0068000 Salix brachista HOM05D002001 ORTHO05D004100 4.5e-105 385.2 239 79.1
Actinidia26158 Actinidia chinensis HOM05D002001 ORTHO05D004100 1.0e-104 384.0 239 79.5
Eucgr.G00401 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.0e-104 384.0 239 79.9
TWI14G0623 Tripterygium wilfordii HOM05D002001 ORTHO05D004100 1.0e-104 384.0 239 78.7
arahy.Tifrunner.gnm1.ann1.97GRLX Arachis hypogaea HOM05D002001 ORTHO05D004100 1.3e-104 383.6 239 78.7
Glyma.08G188800 Glycine max HOM05D002001 ORTHO05D004100 1.3e-104 383.6 239 78.2
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 1.7e-104 383.3 239 80.8
Atru.chr10.1555 Acer truncatum HOM05D002001 ORTHO05D004100 2.2e-104 382.9 239 80.3
Dinv01850 Davidia involucrata HOM05D002001 ORTHO05D004100 2.2e-104 382.9 239 79.9
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 3.8e-104 382.1 239 79.9
RcHm_v2.0_Chr7g0220981 Rosa chinensis HOM05D002001 ORTHO05D004100 3.8e-104 382.1 239 79.1
TPR.G35593 Trifolium pratense HOM05D002001 ORTHO05D004100 6.5e-104 381.3 239 78.2
arahy.Tifrunner.gnm1.ann1.GST58F Arachis hypogaea HOM05D002001 ORTHO05D004100 1.1e-103 380.6 239 78.2
Eucgr.G00404 Eucalyptus grandis HOM05D002001 ORTHO05D004100 1.5e-103 380.2 241 80.1
Sc14g0007300 Simmondsia chinensis HOM05D002001 ORTHO05D004100 1.5e-103 380.2 239 79.1
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 1.9e-103 379.8 239 79.1
DCAR_006689 Daucus carota HOM05D002001 ORTHO05D004100 2.5e-103 379.4 239 79.1
Atru.chr10.1556 Acer truncatum HOM05D002001 ORTHO05D004100 3.2e-103 379.0 239 79.5
Actinidia06465 Actinidia chinensis HOM05D002001 ORTHO05D004100 3.2e-103 379.0 239 79.1
THA.LOC104819173 Tarenaya hassleriana HOM05D002001 ORTHO05D004100 3.2e-103 379.0 239 77.8
Hund06801 Selenicereus undatus HOM05D002001 ORTHO05D004100 4.2e-103 378.6 239 77.8
TAR629G1852 Trochodendron aralioides HOM05D002001 ORTHO05D004100 4.2e-103 378.6 239 79.5
Nitab4.5_0007277g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 7.2e-103 377.9 239 78.7
Aa31LG2G9570 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.2e-102 377.1 239 77.8
BcaB04g20308 Brassica carinata HOM05D002001 ORTHO05D004100 3.6e-102 375.6 240 77.9
BcaC09g49340 Brassica carinata HOM05D002001 ORTHO05D004100 4.7e-102 375.2 240 77.9
A01p29840 Brassica napus HOM05D002001 ORTHO05D004100 4.7e-102 375.2 240 77.9
BraA01t03112Z Brassica rapa HOM05D002001 ORTHO05D004100 4.7e-102 375.2 240 77.9
Hma1.2p1_2522F.1_g323890 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 4.7e-102 375.2 239 79.1
GSVIVG01023351001 Vitis vinifera HOM05D002001 ORTHO05D004100 4.7e-102 375.2 226 84.5
Carub.0002s0418 Capsella rubella HOM05D002001 ORTHO05D004100 6.1e-102 374.8 240 77.9
Lj5A255T82 Lonicera japonica HOM05D002001 ORTHO05D004100 6.1e-102 374.8 239 79.5
Hma1.2p1_2522F.1_g323860 Hydrangea macrophylla HOM05D002001 ORTHO05D004100 1.4e-101 373.6 239 78.7
Rhsim10G0102700 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.4e-101 373.6 239 77.4
Sp2g03500 Schrenkiella parvula HOM05D002001 ORTHO05D004100 1.4e-101 373.6 240 77.5
vmacro19878 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.4e-101 373.6 239 77.8
C01p37690 Brassica napus HOM05D002001 ORTHO05D004100 1.8e-101 373.2 240 77.5
BolC1t03733H Brassica oleracea HOM05D002001 ORTHO05D004100 1.8e-101 373.2 240 77.5
vmacro19877 Vaccinium macrocarpon HOM05D002001 ORTHO05D004100 1.8e-101 373.2 239 79.5
AL2G15430 Arabidopsis lyrata HOM05D002001 ORTHO05D004100 1.5e-100 370.2 240 76.7
AT1G61010 Arabidopsis thaliana HOM05D002001 ORTHO05D004100 1.5e-100 370.2 240 76.2
Rhsim10G0102800 Rhododendron simsii HOM05D002001 ORTHO05D004100 1.5e-100 370.2 239 77.4
EL10Ac9g22038 Beta vulgaris HOM05D002001 ORTHO05D004100 2.0e-100 369.8 239 76.6
Potri.017G076300 Populus trichocarpa HOM05D002001 ORTHO05D004100 3.3e-100 369.0 240 77.5
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 5.7e-100 368.2 239 74.5
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.7e-100 368.2 239 74.5
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.7e-100 368.2 239 74.5
Oeu034119.1 Olea europaea HOM05D002001 ORTHO05D004100 1.7e-99 366.7 239 75.3
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 2.8e-99 365.9 239 75.7
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.8e-99 365.2 239 74.1
Oeu064618.2 Olea europaea HOM05D002001 ORTHO05D004100 1.4e-98 363.6 239 74.1
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.8e-98 363.2 239 73.6
CARHR052150 Cardamine hirsuta HOM05D002001 ORTHO05D004100 3.1e-98 362.5 240 75.4
AUR62016494 Chenopodium quinoa HOM05D002001 ORTHO05D004100 3.1e-98 362.5 239 74.9
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 4.1e-98 362.1 239 74.9
Ah.02g126190 Amaranthus hybridus HOM05D002001 ORTHO05D004100 1.2e-97 360.5 241 75.1
MBI04_g30788_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 1.2e-97 360.5 239 77.8
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 1.2e-97 360.5 245 72.2
MSTRG.20312 Avicennia marina HOM05D002001 ORTHO05D004100 1.6e-97 360.1 239 74.1
Nitab4.5_0028330g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 2.0e-97 359.8 239 77.0
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 2.7e-97 359.4 245 72.7
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 2.7e-97 359.4 245 72.7
PSO063G5226 Papaver somniferum HOM05D002001 ORTHO05D004100 1.3e-96 357.1 239 75.3
Prupe.I006200 Prunus persica HOM05D002001 ORTHO05D004100 2.5e-95 352.8 219 79.5
MBI04_g30789_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D004100 4.7e-94 348.6 239 75.7
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.8e-93 346.7 239 71.1
CDE01G0324 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 5.2e-93 345.1 240 74.6
Nn1g09279 Nelumbo nucifera HOM05D002001 ORTHO05D004100 2.0e-92 343.2 239 71.1
Migut.B00809 Erythranthe guttata HOM05D002001 ORTHO05D004100 1.7e-91 340.1 240 71.7
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 3.7e-91 339.0 239 71.5
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 1.4e-90 337.0 240 71.2
Ah.01g004900 Amaranthus hybridus HOM05D002001 ORTHO05D004100 5.4e-90 335.1 239 69.5
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 9.1e-90 334.3 239 70.3
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.0e-89 333.2 243 71.2
Aqoxy7G01153 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 7.7e-89 331.3 239 69.9
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 1.0e-88 330.9 239 66.1
Aqoxy7G01151 Aquilegia oxysepala HOM05D002001 ORTHO05D004100 1.7e-88 330.1 239 69.9
COL.COLO4_31914 Corchorus olitorius HOM05D002001 ORTHO05D004100 1.9e-87 326.6 202 82.7
Os03g0852900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D004100 2.5e-87 326.2 239 69.0
SHI08868 Sapria himalayana HOM05D002001 ORTHO05D004100 7.2e-87 324.7 240 68.8
Zm00001eb064770 Zea mays HOM05D002001 ORTHO05D004100 1.5e-84 317.0 239 68.2
FAN04G1414 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.0e-84 316.6 244 68.4
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 3.4e-84 315.8 239 66.1
Thhalv10024010m.g Eutrema salsugineum HOM05D002001 ORTHO05D004100 5.7e-84 315.1 241 69.7
Nitab4.5_0000667g0210 Nicotiana tabacum HOM05D002001 ORTHO05D004100 5.7e-84 315.1 213 74.2
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 7.5e-84 314.7 250 64.0
SGA_v2.0_scaffold92G28301 Striga asiatica HOM05D002001 ORTHO05D004100 9.2e-82 307.8 241 66.8
AUR62011671 Chenopodium quinoa HOM05D002001 ORTHO05D004100 4.3e-79 298.9 199 74.4
ATR0568G050 Amborella trichopoda HOM05D002001 ORTHO05D004100 9.5e-79 297.7 241 64.3
ATR0568G179 Amborella trichopoda HOM05D002001 ORTHO05D004100 9.5e-79 297.7 241 63.9
Zm00001eb210600 Zea mays HOM05D002001 ORTHO05D004100 1.6e-78 297.0 239 64.9
Cc02_g22840 Coffea canephora HOM05D002001 ORTHO05D004100 1.0e-77 294.3 186 78.5
Lj5C255T12 Lonicera japonica HOM05D002001 ORTHO05D004100 5.2e-77 292.0 239 65.3
BcaC02g10597 Brassica carinata HOM05D002001 ORTHO05D004100 2.0e-76 290.0 237 64.6
FAN13G2793 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.9e-75 285.4 242 63.6
CDE12G0623 Ceratophyllum demersum HOM05D002001 ORTHO05D004100 7.0e-74 281.6 177 79.7
Prupe.I006100 Prunus persica HOM05D002001 ORTHO05D004100 2.0e-73 280.0 166 80.1
FAN06G3162 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.3e-72 277.3 214 69.2
GSVIVG01023380001 Vitis vinifera HOM05D002001 ORTHO05D004100 1.7e-72 276.9 217 69.6
FvH4_7g26770 Fragaria vesca HOM05D002001 ORTHO05D004100 3.3e-71 272.7 214 68.2
Nitab4.5_0005079g0010 Nicotiana tabacum HOM05D002001 ORTHO05D004100 9.5e-71 271.2 171 78.9
SEGI_19065 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.8e-69 266.9 239 56.9
SEGI_00225 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 2.0e-68 263.5 239 56.9
SMO270G0079 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.2e-60 237.7 240 50.8
SMO306G0001 Selaginella moellendorffii HOM05D002001 ORTHO05D004100 1.2e-60 237.7 240 50.8
Mapoly0069s0028 Marchantia polymorpha HOM05D002001 ORTHO05D004100 8.3e-59 231.5 240 50.0
SEGI_30549 Sequoiadendron giganteum HOM05D002001 ORTHO05D004100 1.2e-57 227.6 212 55.2
Pp3c5_23920 Physcomitrium patens HOM05D002001 ORTHO05D004100 1.6e-57 227.3 240 49.2
Pp3c6_3520 Physcomitrium patens HOM05D002001 ORTHO05D004100 2.7e-57 226.5 240 49.6
BolC4t24247H Brassica oleracea HOM05D002001 ORTHO05D004100 6.8e-53 211.8 234 50.4
CBR_g31441 Chara braunii HOM05D002001 ORTHO05D004100 1.5e-52 210.7 244 45.9
AagrBONN_evm.TU.Sc2ySwM_344.449 Anthoceros agrestis HOM05D002001 ORTHO05D004100 2.2e-51 206.8 242 44.6
AagrBONN_evm.TU.Sc2ySwM_228.5774 Anthoceros agrestis HOM05D002001 ORTHO05D004100 2.7e-49 199.9 242 43.8
C04p25620 Brassica napus HOM05D002001 ORTHO05D004100 1.4e-45 187.6 181 55.2
C05p50850 Brassica napus HOM05D002001 ORTHO05D004100 4.0e-45 186.0 181 55.2
Oeu023418.1 Olea europaea HOM05D002001 ORTHO05D004100 6.9e-45 185.3 177 55.4
CSS0036640 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D004100 1.5e-39 167.5 239 44.8
FvH4_5g28770 Fragaria vesca HOM05D002001 ORTHO05D004100 3.8e-35 152.9 93 77.4
FvH4_5g28761 Fragaria vesca HOM05D002001 ORTHO05D004100 8.4e-35 151.8 94 85.1
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 2.4e-26 123.6 237 31.2
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 3.1e-21 106.7 287 28.9
FAN08G2113 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.7e-19 100.9 93 57.0
Haze_26930 Corylus avellana HOM05D002001 ORTHO05D004100 2.1e-17 94.0 184 32.1
ECA246G0076 Erigeron canadensis HOM05D002001 ORTHO05D187146 1.0e-16 91.7 120 35.0
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 4.1e-13 79.7 250 29.6
Medtr2g015350 Medicago truncatula HOM05D002001 ORTHO05D004100 6.1e-09 65.9 87 43.7
AagrBONN_evm.TU.Sc2ySwM_344.448 Anthoceros agrestis HOM05D002001 ORTHO05D004100 9.7e-07 58.5 100 36.0


User provided reference genes

Program Settings