Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 2066.2 1035 100.0
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1607.8 976 82.8
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1605.1 1031 79.5
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1350.5 1074 66.7
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1318.9 973 70.3
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1313.1 1034 66.4
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1309.3 1060 66.4
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1301.2 947 69.1
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1286.9 1015 67.3
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1286.9 955 69.2
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1285.8 1015 67.1
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1284.6 973 68.4
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1278.1 955 68.7
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1277.3 1029 66.0
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1277.3 1012 66.7
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1275.8 1024 67.0
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1274.2 978 68.6
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1270.4 1006 67.3
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1265.0 984 68.2
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1263.1 1006 67.0
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1262.3 979 66.6
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1256.5 1002 66.2
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1253.8 1011 65.8
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1247.6 974 65.8
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1247.6 991 65.3
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1247.3 974 67.6
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1245.3 974 65.7
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1241.1 1026 63.9
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1236.1 979 65.6
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1229.2 975 67.0
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1229.2 960 67.5
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1222.2 971 66.8
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 0.0e+00 1214.1 890 70.4
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1207.6 1012 64.1
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1203.3 994 64.1
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1194.9 984 64.6
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 0.0e+00 1178.7 950 63.8
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1170.6 1015 61.6
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1167.1 1016 61.3
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 0.0e+00 1154.0 986 62.4
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 0.0e+00 1143.6 988 61.6
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1139.8 953 65.2
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 0.0e+00 1123.6 984 60.8
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 0.0e+00 1121.7 909 66.2
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 0.0e+00 1117.4 1000 60.2
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 0.0e+00 1112.1 957 62.0
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 0.0e+00 1112.1 1001 59.7
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 0.0e+00 1110.5 1000 60.0
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 0.0e+00 1108.2 1028 58.9
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 0.0e+00 1100.5 904 65.5
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 0.0e+00 1100.5 1005 59.5
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1096.6 1008 58.9
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 0.0e+00 1095.5 1007 59.5
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 0.0e+00 1092.0 1003 59.1
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1092.0 1002 59.4
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1087.8 1003 59.3
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1087.4 1005 59.0
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 0.0e+00 1087.4 1000 59.3
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1086.2 845 69.2
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 0.0e+00 1077.4 1013 58.7
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 5.0e-311 1071.2 982 60.5
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 1.1e-310 1070.1 737 74.8
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 2.3e-308 1062.4 807 70.6
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 1.7e-303 1046.2 1033 56.4
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.3e-292 1010.0 1010 55.8
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 1.7e-284 983.0 970 55.8
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 4.3e-283 978.4 985 57.2
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 6.6e-276 954.5 989 55.8
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.8e-274 949.1 755 67.8
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 5.2e-273 944.9 878 60.7
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.1e-270 937.2 774 63.3
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.2e-269 933.7 1026 51.7
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 4.6e-269 931.8 751 67.8
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 9.6e-267 924.1 826 62.5
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.2e-266 923.7 960 55.5
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.6e-266 923.3 843 61.4
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 6.9e-265 917.9 726 68.3
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 6.9e-265 917.9 988 53.9
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 9.9e-264 914.1 794 60.8
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 9.3e-262 907.5 996 53.1
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.2e-261 907.1 919 55.9
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.7e-261 906.0 978 54.1
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 1.5e-259 900.2 917 57.6
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 4.8e-258 895.2 838 60.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 2.0e-256 889.8 703 67.3
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 4.5e-256 888.6 908 56.3
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 4.9e-255 885.2 948 54.5
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 1.9e-254 883.2 602 75.2
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.9e-254 883.2 927 56.2
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 5.4e-254 881.7 690 66.7
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.1e-249 867.5 947 53.3
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.7e-247 860.1 836 58.7
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 2.4e-241 839.7 1040 50.1
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 1.2e-237 827.4 1002 49.2
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.1e-225 787.7 698 61.3
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 6.9e-217 758.4 1030 48.0
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 1.1e-214 751.1 781 52.8
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 4.7e-213 745.7 843 52.0
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.0e-207 728.0 706 59.6
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.2e-206 723.0 730 55.3
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 9.8e-187 658.3 1065 41.9
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.6e-173 614.4 586 59.7
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 3.4e-171 606.7 930 40.5
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.9e-169 600.9 741 50.3
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 1.2e-160 571.6 1093 37.6
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 7.6e-155 552.4 943 37.4
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.7e-151 541.2 745 41.2
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 2.1e-125 454.5 572 46.0
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 2.2e-114 417.9 425 58.4
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 4.5e-67 260.8 208 63.5
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.7e-64 250.8 246 56.9
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 3.0e-50 204.9 361 34.1
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 9.5e-49 199.9 197 60.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 1.9e-41 175.6 324 34.0
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 2.4e-36 158.7 544 27.0
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 2.1e-24 119.0 123 52.0
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 2.6e-22 112.1 87 67.8
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 5.4e-20 104.4 74 70.3
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-16 92.4 130 43.8
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 8.1e-16 90.5 80 53.8
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 3.1e-15 88.6 72 52.8
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 2.6e-14 85.5 70 64.3
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-14 84.0 292 28.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.0e-10 73.6 41 90.2
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.1e-09 70.1 157 26.1
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.3e-09 68.2 38 89.5
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 5.3e-07 61.2 187 24.6
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 2.6e-06 58.9 209 23.0
Hma1.2p1_0053F.1_g030840 Hydrangea macrophylla HOM05D001486 ORTHO05D017058 5.8e-06 57.8 41 65.9
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 7.6e-06 57.4 101 28.7


User provided reference genes

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