Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.4e-195 684.5 357 100.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 9.0e-47 191.8 271 42.1
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.7e-43 180.3 271 39.9
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 6.0e-43 179.1 272 39.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 4.3e-41 172.9 259 37.8
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 7.3e-41 172.2 261 38.3
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 9.6e-41 171.8 281 36.7
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 9.6e-41 171.8 272 39.7
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.6e-40 171.0 262 39.3
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.6e-40 171.0 289 38.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.8e-40 170.2 259 37.8
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 4.8e-40 169.5 267 38.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 6.2e-40 169.1 274 37.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 8.1e-40 168.7 262 36.3
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 8.1e-40 168.7 262 36.3
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 8.1e-40 168.7 273 37.0
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-39 168.3 290 36.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-39 167.9 261 37.5
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.4e-39 167.9 268 35.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.4e-39 167.9 261 36.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.8e-39 167.5 283 35.7
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.8e-39 167.5 263 36.9
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.8e-39 167.5 264 35.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.4e-39 167.2 251 37.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-39 167.2 260 36.9
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.4e-39 167.2 260 37.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.4e-39 167.2 254 37.4
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.1e-39 166.8 260 36.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.1e-39 166.8 262 38.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 3.1e-39 166.8 283 36.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.0e-39 166.4 308 35.7
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.0e-39 166.4 316 33.9
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 4.0e-39 166.4 308 35.4
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.3e-39 166.0 308 35.7
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.9e-39 165.6 263 36.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.9e-39 165.6 262 37.8
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 9.0e-39 165.2 289 36.3
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 9.0e-39 165.2 259 37.1
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.0e-39 165.2 308 35.7
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.2e-38 164.9 283 35.0
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.5e-38 164.5 283 35.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.5e-38 164.5 259 37.1
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.5e-38 164.5 246 37.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.0e-38 164.1 256 38.7
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 2.6e-38 163.7 271 35.8
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.6e-38 163.7 283 34.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.6e-38 163.7 270 35.2
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.4e-38 163.3 279 33.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.4e-38 163.3 257 37.0
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.4e-38 163.3 260 37.3
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 3.4e-38 163.3 256 38.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.5e-38 162.9 267 36.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 4.5e-38 162.9 237 38.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.5e-38 162.9 235 40.4
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 4.5e-38 162.9 254 36.6
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.8e-38 162.5 285 35.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.8e-38 162.5 284 35.6
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 5.8e-38 162.5 236 38.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 7.6e-38 162.2 260 35.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 7.6e-38 162.2 259 37.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 7.6e-38 162.2 292 34.6
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 9.9e-38 161.8 263 35.7
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 9.9e-38 161.8 292 34.2
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.3e-37 161.4 258 36.0
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-37 161.4 265 37.0
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.3e-37 161.4 292 33.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.2e-37 160.6 311 34.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 2.9e-37 160.2 252 38.1
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.9e-37 160.2 255 37.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.8e-37 159.8 259 36.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.8e-37 159.8 263 36.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.8e-37 159.8 300 36.0
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.8e-37 159.8 265 36.2
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.8e-37 159.8 251 37.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.8e-37 159.8 329 30.7
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.9e-37 159.5 310 34.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.9e-37 159.5 259 36.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 6.4e-37 159.1 252 35.7
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 6.4e-37 159.1 238 37.8
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 8.4e-37 158.7 321 34.9
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 8.4e-37 158.7 263 35.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.1e-36 158.3 308 32.8
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.9e-36 157.5 301 34.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.4e-36 157.1 259 35.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.2e-36 156.8 289 33.9
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.2e-36 156.8 260 34.6
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 4.2e-36 156.4 244 38.1
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 5.4e-36 156.0 187 43.3
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 9.3e-36 155.2 262 33.6
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.2e-35 154.8 301 33.6
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.2e-35 154.8 319 31.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.2e-35 154.8 250 36.4
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.6e-35 154.5 198 42.9
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.6e-35 154.5 262 34.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.1e-35 154.1 281 34.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.6e-35 152.9 252 34.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.6e-35 152.9 306 33.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.0e-35 152.5 241 36.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 6.0e-35 152.5 299 32.1
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-34 151.8 318 32.7
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.8e-34 151.0 274 34.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 6.7e-34 149.1 304 32.9
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 6.7e-34 149.1 270 34.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.1e-33 148.3 289 30.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.1e-33 148.3 295 32.9
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-33 147.9 246 36.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 4.3e-33 146.4 243 37.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.4e-33 145.6 305 31.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.1e-32 144.1 260 35.0
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 5.8e-30 136.0 200 40.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 9.9e-30 135.2 260 33.5
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 9.9e-30 135.2 322 30.4
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.7e-27 127.1 260 31.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 7.9e-27 125.6 286 32.2
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.0e-26 123.6 209 36.4
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 6.7e-26 122.5 298 31.2
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 8.7e-26 122.1 183 41.0
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.1e-25 121.7 263 30.0
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.6e-25 119.4 203 35.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.6e-25 119.4 294 30.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.7e-24 116.7 306 29.4
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.2e-21 107.5 208 34.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.9e-21 107.1 264 29.2
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 7.1e-20 102.4 101 47.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.0e-18 98.6 171 32.7
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-16 91.7 229 28.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.6e-16 91.3 101 47.5
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 4.8e-16 89.7 122 41.8
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.3e-16 89.4 187 33.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.0e-15 85.5 178 31.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.2e-14 85.1 182 31.9
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.6e-14 84.0 153 34.0
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 2.6e-14 84.0 120 37.5
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.6e-14 82.4 132 38.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.9e-13 80.5 122 36.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.4e-12 78.2 86 43.0
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 4.2e-12 76.6 145 31.0
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.3e-12 75.5 131 36.6
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 3.0e-10 70.5 129 34.9
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.4e-09 65.9 107 38.3
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.7e-08 64.7 68 42.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.7e-08 64.7 176 27.8
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.8e-08 63.2 130 32.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 5.3e-07 59.7 65 47.7


User provided reference genes

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