Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025098 Carpinus fangiana HOM05D003327 ORTHO05D004535 0.0e+00 1610.9 965 100.0
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.1e-110 405.6 994 35.6
PRCOL_00002302 Prasinoderma coloniale HOM05D003327 ORTHO05D004535 1.9e-107 394.8 956 43.1
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.9e-104 384.8 975 40.0
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.1e-102 379.0 975 39.6
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 1.8e-102 378.3 967 41.2
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 6.9e-102 376.3 970 40.3
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 8.8e-97 359.4 982 35.4
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 1.1e-96 359.0 1002 35.6
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 1.5e-96 358.6 977 36.2
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 7.4e-96 356.3 977 38.1
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 7.4e-96 356.3 991 36.6
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 9.7e-96 355.9 975 38.2
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 1.3e-95 355.5 970 38.4
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 2.2e-95 354.8 983 38.7
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 2.8e-95 354.4 968 39.8
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 1.8e-94 351.7 965 38.7
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.4e-94 351.3 1004 36.3
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 5.3e-94 350.1 978 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 1.3e-92 345.5 972 36.2
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 1.3e-92 345.5 972 38.5
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.7e-92 345.1 983 36.3
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 1.7e-92 345.1 972 38.5
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 3.8e-92 344.0 975 39.6
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 5.0e-92 343.6 969 39.1
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 2.5e-91 341.3 975 38.7
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 4.2e-91 340.5 970 34.5
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 9.4e-91 339.3 1004 36.4
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 1.2e-90 339.0 975 38.4
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 1.2e-90 339.0 976 38.2
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 1.6e-90 338.6 971 37.5
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 1.6e-90 338.6 964 37.9
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 2.1e-90 338.2 976 37.8
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.1e-90 338.2 968 39.3
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 2.1e-90 338.2 963 37.9
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 3.6e-90 337.4 973 35.8
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 6.1e-90 336.7 970 37.7
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 6.1e-90 336.7 976 37.8
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 7.9e-90 336.3 969 38.4
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 7.9e-90 336.3 970 37.9
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 1.0e-89 335.9 971 39.5
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.4e-89 335.5 970 37.6
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 1.4e-89 335.5 971 39.4
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 1.4e-89 335.5 970 37.4
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 1.4e-89 335.5 981 37.5
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.4e-89 335.5 974 39.7
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.8e-89 335.1 967 39.2
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 3.0e-89 334.3 968 38.8
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 3.9e-89 334.0 971 39.3
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 5.1e-89 333.6 972 38.0
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 6.7e-89 333.2 971 37.5
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 6.7e-89 333.2 891 39.6
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 6.7e-89 333.2 962 37.8
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 8.8e-89 332.8 970 37.5
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 1.5e-88 332.0 973 38.1
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 2.0e-88 331.6 964 39.1
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 2.6e-88 331.3 968 38.1
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 2.6e-88 331.3 970 37.4
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 5.7e-88 330.1 965 37.9
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 3.7e-87 327.4 968 38.1
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 6.3e-87 326.6 969 38.3
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 6.3e-87 326.6 970 38.8
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.4e-86 325.5 973 38.4
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 1.8e-86 325.1 966 39.2
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 9.1e-86 322.8 974 37.4
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.6e-85 322.0 968 37.9
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 2.0e-85 321.6 963 37.2
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 3.5e-85 320.9 970 38.1
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 4.5e-85 320.5 968 38.4
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 7.7e-85 319.7 968 37.0
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 2.2e-84 318.2 966 38.4
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 2.9e-84 317.8 977 37.4
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 6.5e-84 316.6 965 37.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 8.5e-84 316.2 951 37.9
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 1.1e-83 315.8 958 34.9
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 1.1e-83 315.8 970 37.9
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 5.5e-83 313.5 968 37.7
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 1.2e-82 312.4 994 31.5
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-82 312.4 961 36.6
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 1.2e-82 312.4 961 36.6
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 1.2e-82 312.4 974 37.6
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.6e-82 312.0 961 36.4
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 1.6e-82 312.0 969 37.7
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 1.6e-82 312.0 966 38.2
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.6e-82 312.0 964 37.2
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 2.7e-82 311.2 961 36.6
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 3.6e-82 310.8 969 37.9
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 4.7e-82 310.5 961 36.4
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 4.7e-82 310.5 961 36.4
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 4.7e-82 310.5 973 38.0
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 6.1e-82 310.1 965 37.5
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 1.4e-81 308.9 964 37.7
HanXRQChr15g0484291 Helianthus annuus HOM05D003327 ORTHO05D004535 3.0e-81 307.8 963 36.8
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 3.0e-81 307.8 1002 35.5
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 8.8e-81 306.2 970 36.5
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 1.1e-80 305.8 971 38.4
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 5.7e-80 303.5 972 37.7
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 9.7e-80 302.8 956 36.7
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 8.2e-79 299.7 973 38.2
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 1.4e-78 298.9 962 36.7
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.4e-78 298.9 960 36.5
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 4.1e-78 297.4 969 36.6
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 7.0e-78 296.6 967 37.5
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 7.0e-78 296.6 969 38.1
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 1.6e-77 295.4 960 36.5
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 5.0e-76 290.4 616 42.2
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 2.5e-75 288.1 960 35.0
Rhsim05G0039200 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.5e-75 288.1 958 36.1
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 4.2e-75 287.3 960 34.9
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 4.2e-75 287.3 964 36.6
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 5.5e-75 287.0 967 37.0
Ciclev10018758m.g Citrus clementina HOM05D003327 ORTHO05D004535 1.6e-74 285.4 974 32.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 8.0e-74 283.1 955 35.3
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 3.0e-73 281.2 989 33.5
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 1.7e-71 275.4 972 31.2
Medtr1g011710 Medicago truncatula HOM05D003327 ORTHO05D004535 4.1e-70 270.8 973 36.7
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 2.0e-69 268.5 989 35.1
CAN.G248.36 Capsicum annuum HOM05D003327 ORTHO05D004535 2.7e-69 268.1 821 38.4
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 4.5e-69 267.3 971 36.5
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 7.7e-69 266.5 968 35.4
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 1.5e-67 262.3 1002 28.9
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.6e-66 258.8 979 36.3
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 4.7e-66 257.3 960 36.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.8e-65 255.4 969 36.6
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 3.0e-65 254.6 966 29.3
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 1.5e-64 252.3 915 33.8
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 3.4e-64 251.1 969 36.3
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.2e-63 248.4 765 36.1
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.6e-61 242.3 793 32.8
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 3.8e-60 237.7 970 34.4
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 7.3e-59 233.4 957 36.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 2.0e-56 225.3 373 42.1
Rhsim05G0041700 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.6e-56 224.9 959 33.7
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.7e-55 222.2 525 31.8
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 9.2e-54 216.5 978 34.9
Rhsim05G0038800 Rhododendron simsii HOM05D003327 ORTHO05D004535 8.3e-47 193.4 409 36.4
RcHm_v2.0_Chr6g0275041 Rosa chinensis HOM05D003327 ORTHO05D004535 1.0e-44 186.4 431 38.1
BcaC01g06678 Brassica carinata HOM05D003327 ORTHO05D004535 2.3e-44 185.3 469 37.1
ECA238G3940 Erigeron canadensis HOM05D003327 ORTHO05D004535 4.7e-42 177.6 778 25.1
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 9.8e-40 169.9 705 25.4
Lj1g0006616 Lotus japonicus HOM05D003327 ORTHO05D004535 1.4e-38 166.0 664 32.4
GSVIVG01030385001 Vitis vinifera HOM05D003327 ORTHO05D004535 1.2e-32 146.4 794 27.1
HanXRQChr01g0023131 Helianthus annuus HOM05D003327 ORTHO05D004535 9.2e-30 136.7 306 52.9
C03p36710 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-26 126.3 457 29.5
BolC3t15985H Brassica oleracea HOM05D003327 ORTHO05D004535 1.2e-26 126.3 457 29.5
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 1.2e-26 126.3 616 35.1
BcaC01g06672 Brassica carinata HOM05D003327 ORTHO05D004535 3.4e-24 118.2 161 41.6
Lalb_Chr24g0399871 Lupinus albus HOM05D003327 ORTHO05D004535 1.7e-23 115.9 207 40.1
RcHm_v2.0_Chr6g0275031 Rosa chinensis HOM05D003327 ORTHO05D004535 3.8e-23 114.8 387 32.8
BraA03t12222Z Brassica rapa HOM05D003327 ORTHO05D004535 8.4e-23 113.6 127 40.9
C03p36760 Brassica napus HOM05D003327 ORTHO05D004535 1.2e-21 109.8 468 33.5
Prupe.3G207300 Prunus persica HOM05D003327 ORTHO05D004535 1.0e-20 106.7 214 43.5
TPR.G36382 Trifolium pratense HOM05D003327 ORTHO05D004535 1.0e-20 106.7 103 44.7
AT4G38590 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 3.9e-20 104.8 187 38.0
BcaC01g06673 Brassica carinata HOM05D003327 ORTHO05D004535 3.9e-20 104.8 103 43.7
A03p30430 Brassica napus HOM05D003327 ORTHO05D004535 5.1e-20 104.4 109 42.2
Nn2g15288 Nelumbo nucifera HOM05D003327 ORTHO05D004535 3.3e-19 101.7 100 41.0
Nn2g15287 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.6e-18 99.4 102 50.0
Prupe.2G325100 Prunus persica HOM05D003327 ORTHO05D004535 3.6e-18 98.2 107 39.3
Nn2g15286 Nelumbo nucifera HOM05D003327 ORTHO05D004535 1.2e-16 93.2 205 35.1
Thecc.05G055100 Theobroma cacao HOM05D003327 ORTHO05D004535 1.2e-16 93.2 92 44.6
BcaB01g02538 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-15 88.6 96 51.0
RcHm_v2.0_Chr3g0494631 Rosa chinensis HOM05D003327 ORTHO05D004535 3.8e-15 88.2 328 25.0
EL10Ac9g22810 Beta vulgaris HOM05D003327 ORTHO05D004535 6.4e-15 87.4 100 45.0
BolC3t15990H Brassica oleracea HOM05D003327 ORTHO05D004535 3.6e-10 71.6 103 36.9
HanXRQChr01g0023151 Helianthus annuus HOM05D003327 ORTHO05D004535 2.4e-09 68.9 92 41.3
RcHm_v2.0_Chr3g0494641 Rosa chinensis HOM05D003327 ORTHO05D024129 3.1e-09 68.6 259 24.3
HanXRQChr13g0424841 Helianthus annuus HOM05D003327 ORTHO05D004535 2.6e-08 65.5 243 43.6
HanXRQChr00c0158g0572131 Helianthus annuus HOM05D003327 ORTHO05D004535 3.4e-08 65.1 243 44.9
Aqoxy3G02752 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 5.8e-08 64.3 55 60.0
Aqoxy3G03782 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 7.6e-08 63.9 67 50.7
Aqoxy7G02450 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 7.6e-08 63.9 67 50.7
HanXRQChr04g0102061 Helianthus annuus HOM05D003327 ORTHO05D004535 7.6e-08 63.9 243 42.8
ATR0661G363 Amborella trichopoda HOM05D003327 ORTHO05D004535 1.7e-07 62.8 182 34.6
Lalb_Chr24g0399881 Lupinus albus HOM05D003327 ORTHO05D018410 1.7e-07 62.8 105 39.0
HanXRQChr04g0102071 Helianthus annuus HOM05D003327 ORTHO05D004535 2.2e-07 62.4 243 42.4
HanXRQChr13g0424861 Helianthus annuus HOM05D003327 ORTHO05D004535 2.2e-07 62.4 243 42.4
HanXRQChr13g0424851 Helianthus annuus HOM05D003327 ORTHO05D004535 2.9e-07 62.0 104 39.4
Aqoxy1G02392 Aquilegia oxysepala HOM05D003327 ORTHO05D018410 6.4e-07 60.8 67 49.3
Lalb_Chr24g0399861 Lupinus albus HOM05D003327 ORTHO05D004535 6.4e-07 60.8 104 32.7
COL.COLO4_23037 Corchorus olitorius HOM05D003327 ORTHO05D004535 1.4e-06 59.7 114 34.2
COL.COLO4_21266 Corchorus olitorius HOM05D003327 ORTHO05D018410 4.2e-06 58.2 103 40.8
Dinv12917 Davidia involucrata HOM05D003327 ORTHO05D004535 4.2e-06 58.2 108 37.0


User provided reference genes

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