Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.8e-260 902.1 466 100.0
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.0e-42 178.7 445 32.8
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.3e-42 178.3 440 32.0
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.7e-42 177.9 438 33.6
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 2.3e-42 177.6 441 33.3
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 2.3e-42 177.6 441 32.2
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 2.3e-42 177.6 441 32.0
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 3.0e-42 177.2 435 31.7
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.0e-42 177.2 443 34.3
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 5.1e-42 176.4 440 32.3
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 5.1e-42 176.4 441 32.7
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 5.1e-42 176.4 442 32.4
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 6.6e-42 176.0 441 33.1
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 6.6e-42 176.0 437 32.0
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 6.6e-42 176.0 442 33.0
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 6.6e-42 176.0 434 31.6
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.9e-41 174.5 440 31.4
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 2.5e-41 174.1 441 32.7
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 3.3e-41 173.7 435 31.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 4.3e-41 173.3 439 31.4
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 4.3e-41 173.3 442 32.6
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 5.6e-41 172.9 414 31.9
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 7.3e-41 172.6 440 32.0
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 1.3e-40 171.8 441 31.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.3e-40 171.8 445 31.7
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.6e-40 171.4 441 32.4
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 2.1e-40 171.0 434 31.3
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.1e-40 171.0 441 32.2
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 2.1e-40 171.0 441 30.6
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 3.6e-40 170.2 437 31.1
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 3.6e-40 170.2 441 30.8
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 4.8e-40 169.9 465 30.5
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.8e-40 169.9 438 31.3
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 4.8e-40 169.9 443 31.4
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 6.2e-40 169.5 433 31.6
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.2e-40 169.5 441 32.2
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 6.2e-40 169.5 433 31.2
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 8.1e-40 169.1 440 33.0
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 8.1e-40 169.1 439 32.1
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 8.1e-40 169.1 439 30.8
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.1e-39 168.7 442 32.8
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.1e-39 168.7 433 32.1
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.1e-39 168.7 438 30.8
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.1e-39 168.7 442 31.2
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 1.4e-39 168.3 446 31.6
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.4e-39 168.3 441 31.1
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.4e-39 168.3 442 31.9
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.8e-39 167.9 446 30.5
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.8e-39 167.9 440 31.6
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.4e-39 167.5 437 32.3
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.4e-39 167.5 446 30.3
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.4e-39 167.5 432 30.1
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.4e-39 167.5 433 32.3
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 3.1e-39 167.2 438 31.5
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 3.1e-39 167.2 439 30.8
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 3.1e-39 167.2 439 31.0
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 4.0e-39 166.8 443 32.7
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 4.0e-39 166.8 440 31.4
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 4.0e-39 166.8 440 31.6
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 5.3e-39 166.4 443 30.9
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 5.3e-39 166.4 437 31.8
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 6.9e-39 166.0 440 32.5
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 6.9e-39 166.0 426 31.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 6.9e-39 166.0 440 30.9
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 6.9e-39 166.0 442 32.6
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.2e-38 165.2 446 30.3
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.2e-38 165.2 446 30.3
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 1.2e-38 165.2 446 31.8
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.5e-38 164.9 447 29.5
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.5e-38 164.9 422 31.8
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.5e-38 164.9 448 31.2
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 2.0e-38 164.5 446 30.0
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 2.0e-38 164.5 439 30.8
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 2.0e-38 164.5 440 30.9
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 2.6e-38 164.1 447 30.2
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 2.6e-38 164.1 443 30.5
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 3.4e-38 163.7 446 30.0
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 3.4e-38 163.7 447 29.8
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 3.4e-38 163.7 443 31.2
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.4e-38 163.7 398 32.7
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 5.8e-38 162.9 437 31.6
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 5.8e-38 162.9 439 31.0
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 5.8e-38 162.9 427 30.9
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 7.6e-38 162.5 437 31.4
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 7.6e-38 162.5 446 30.3
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 7.6e-38 162.5 433 31.2
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 7.6e-38 162.5 432 30.1
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 7.6e-38 162.5 441 30.8
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 9.9e-38 162.2 433 30.9
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 9.9e-38 162.2 433 30.9
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 9.9e-38 162.2 440 30.9
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.7e-37 161.4 440 29.8
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.7e-37 161.4 438 31.3
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 2.2e-37 161.0 446 29.6
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 2.9e-37 160.6 433 30.5
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.8e-37 160.2 440 29.8
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 3.8e-37 160.2 446 29.4
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 4.9e-37 159.8 433 30.7
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 6.4e-37 159.5 440 31.4
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 8.4e-37 159.1 436 30.5
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.1e-36 158.7 406 30.0
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 1.4e-36 158.3 443 29.6
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.9e-36 157.9 423 31.9
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.9e-36 157.9 440 30.7
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.4e-36 157.5 421 31.6
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.4e-36 157.5 439 29.2
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.2e-36 157.1 440 29.1
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 3.2e-36 157.1 433 31.2
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 3.2e-36 157.1 427 31.1
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 3.2e-36 157.1 437 30.4
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 7.1e-36 156.0 441 30.6
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 7.1e-36 156.0 427 30.9
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 7.1e-36 156.0 433 29.8
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 7.1e-36 156.0 444 29.5
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 9.3e-36 155.6 440 29.5
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.2e-35 155.2 433 30.3
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 1.2e-35 155.2 446 29.4
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 2.7e-35 154.1 435 30.8
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 2.7e-35 154.1 449 29.6
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 3.5e-35 153.7 439 29.2
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 3.5e-35 153.7 308 32.5
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-34 151.8 421 30.9
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.3e-34 151.8 466 30.3
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.7e-34 151.4 441 29.3
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 2.3e-34 151.0 431 29.9
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 6.6e-34 149.4 316 35.4
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 8.7e-34 149.1 466 30.0
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.5e-33 147.5 440 28.0
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.5e-33 147.5 440 28.0
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.3e-32 145.2 432 28.2
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.1e-32 144.4 466 30.0
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.6e-32 143.7 440 27.0
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 8.1e-32 142.5 337 33.5
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 8.1e-32 142.5 337 33.5
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 8.1e-32 142.5 294 33.0
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 2.4e-31 141.0 498 26.1
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 2.4e-31 141.0 432 30.6
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 6.9e-31 139.4 301 32.6
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.5e-30 138.3 380 32.1
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 7.6e-30 136.0 339 33.9
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 8.4e-29 132.5 399 29.8
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.4e-28 131.7 372 28.5
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 1.1e-25 122.1 230 35.2
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 2.5e-25 120.9 219 33.3
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 8.1e-24 115.9 196 37.8
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.4e-23 115.2 244 31.6
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 2.4e-23 114.4 286 28.7
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 2.4e-23 114.4 420 28.3
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.5e-19 100.5 448 26.3
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.3e-18 98.6 296 31.8
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-18 98.6 212 30.2
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-18 98.6 212 30.2
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 1.9e-17 94.7 212 29.7
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 7.4e-17 92.8 263 32.3
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.3e-16 92.0 228 33.8
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-16 91.3 239 28.0
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 1.4e-15 88.6 250 32.0
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 5.3e-15 86.7 244 34.8
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 1.0e-13 82.4 232 32.3
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 3.2e-12 77.4 211 27.0
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 4.2e-12 77.0 165 34.5
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 2.7e-11 74.3 121 41.3
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 5.1e-10 70.1 186 27.4
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 3.7e-08 63.9 114 39.5
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 6.3e-08 63.2 130 33.8
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 9.0e-07 59.3 105 29.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.2e-06 58.9 78 44.9
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 2.6e-06 57.8 151 27.8


User provided reference genes

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