Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022862 Carpinus fangiana HOM05D005106 ORTHO05D006224 3.2e-49 198.0 92 100.0
TAR627G0282 Trochodendron aralioides HOM05D005106 ORTHO05D006224 7.5e-30 133.7 86 70.9
Zm00001eb184540 Zea mays HOM05D005106 ORTHO05D006224 2.2e-29 132.1 86 69.8
Zm00001eb246940 Zea mays HOM05D005106 ORTHO05D006224 2.2e-29 132.1 86 69.8
Gohir.A03G154800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 2.8e-29 131.7 86 69.8
Gohir.D02G177800 Gossypium hirsutum HOM05D005106 ORTHO05D006224 2.8e-29 131.7 86 69.8
Gorai.005G199600 Gossypium raimondii HOM05D005106 ORTHO05D006224 2.8e-29 131.7 86 69.8
Os02g0612300 Oryza sativa ssp. japonica HOM05D005106 ORTHO05D006224 2.8e-29 131.7 86 68.6
SEGI_07457 Sequoiadendron giganteum HOM05D005106 ORTHO05D006224 2.8e-29 131.7 86 69.8
Manes.13G142600 Manihot esculenta HOM05D005106 ORTHO05D006224 4.8e-29 131.0 86 69.8
MSTRG.25482 Avicennia marina HOM05D005106 ORTHO05D006224 6.3e-29 130.6 86 69.8
CSS0035973 Camellia sinensis var. sinensis HOM05D005106 ORTHO05D006224 6.3e-29 130.6 86 69.8
PSO541G1716 Papaver somniferum HOM05D005106 ORTHO05D006224 6.3e-29 130.6 86 68.6
PSO675G4288 Papaver somniferum HOM05D005106 ORTHO05D006224 6.3e-29 130.6 86 68.6
PGR142G3950 Punica granatum HOM05D005106 ORTHO05D006224 6.3e-29 130.6 86 68.6
Duzib052G0667 Durio zibethinus HOM05D005106 ORTHO05D006224 8.2e-29 130.2 86 68.6
Duzib132G0012 Durio zibethinus HOM05D005106 ORTHO05D006224 8.2e-29 130.2 86 68.6
Duzib132G0108 Durio zibethinus HOM05D005106 ORTHO05D006224 8.2e-29 130.2 86 68.6
Migut.C01328 Erythranthe guttata HOM05D005106 ORTHO05D006224 8.2e-29 130.2 86 68.6
Thecc.02G185300 Theobroma cacao HOM05D005106 ORTHO05D006224 8.2e-29 130.2 86 68.6
CBR_g4062 Chara braunii HOM05D005106 ORTHO05D006224 1.1e-28 129.8 81 70.4
Eucgr.K01050 Eucalyptus grandis HOM05D005106 ORTHO05D006224 1.1e-28 129.8 86 68.6
Mapoly0001s0392 Marchantia polymorpha HOM05D005106 ORTHO05D006224 1.1e-28 129.8 86 68.6
TWI23G0861 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 1.1e-28 129.8 86 68.6
Aqoxy1G02310 Aquilegia oxysepala HOM05D005106 ORTHO05D006224 1.4e-28 129.4 86 68.6
FAN09G4502 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.4e-28 129.4 86 68.6
Phvul.005G100900 Phaseolus vulgaris HOM05D005106 ORTHO05D006224 1.4e-28 129.4 86 67.4
Prupe.3G134700 Prunus persica HOM05D005106 ORTHO05D006224 1.4e-28 129.4 86 68.6
Sc04g0004750 Simmondsia chinensis HOM05D005106 ORTHO05D006224 1.4e-28 129.4 86 68.6
CANSAT64G0803 Cannabis sativa HOM05D005106 ORTHO05D006224 1.8e-28 129.0 86 68.6
THA.LOC104801162 Tarenaya hassleriana HOM05D005106 ORTHO05D006224 1.8e-28 129.0 86 68.6
MELO3C026304.2 Cucumis melo HOM05D005106 ORTHO05D006224 2.4e-28 128.6 86 67.4
CsaV3_4G010150 Cucumis sativus L. HOM05D005106 ORTHO05D006224 2.4e-28 128.6 86 67.4
Glyma.13G294500 Glycine max HOM05D005106 ORTHO05D006224 2.4e-28 128.6 86 68.6
Nn1g06427 Nelumbo nucifera HOM05D005106 ORTHO05D006224 2.4e-28 128.6 86 68.6
Potri.017G014600 Populus trichocarpa HOM05D005106 ORTHO05D006224 2.4e-28 128.6 86 67.4
Lj3g0003979 Lotus japonicus HOM05D005106 ORTHO05D006224 3.1e-28 128.3 86 67.4
Potri.007G137400 Populus trichocarpa HOM05D005106 ORTHO05D006224 3.1e-28 128.3 86 67.4
CiPaw.03G180900 Carya illinoinensis HOM05D005106 ORTHO05D006224 4.1e-28 127.9 86 68.6
FvH4_6g26630 Fragaria vesca HOM05D005106 ORTHO05D006224 4.1e-28 127.9 86 67.4
AagrBONN_evm.TU.Sc2ySwM_362.2111 Anthoceros agrestis HOM05D005106 ORTHO05D006224 5.3e-28 127.5 86 66.3
Medtr2g090655 Medicago truncatula HOM05D005106 ORTHO05D006224 5.3e-28 127.5 86 67.4
Psat5g273600 Pisum sativum HOM05D005106 ORTHO05D006224 5.3e-28 127.5 86 67.4
Glyma.12G206400 Glycine max HOM05D005106 ORTHO05D006224 7.0e-28 127.1 86 67.4
Pp3c17_11470 Physcomitrium patens HOM05D005106 ORTHO05D006224 7.0e-28 127.1 86 66.3
Sed0010388 Sechium edule HOM05D005106 ORTHO05D006224 7.0e-28 127.1 86 66.3
Cre10.g437850 Chlamydomonas reinhardtii HOM05D005106 ORTHO05D006224 9.1e-28 126.7 91 61.5
TWI59G0090 Tripterygium wilfordii HOM05D005106 ORTHO05D006224 9.1e-28 126.7 86 66.3
CiPaw.04G128700 Carya illinoinensis HOM05D005106 ORTHO05D006224 1.2e-27 126.3 86 67.4
ECA238G0369 Erigeron canadensis HOM05D005106 ORTHO05D006224 1.2e-27 126.3 90 63.3
AL8G15820 Arabidopsis lyrata HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
AT5G44200 Arabidopsis thaliana HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
Carub.0008s0432 Capsella rubella HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
CARHR179060 Cardamine hirsuta HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
Ciclev10016365m.g Citrus clementina HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 65.1
Thhalv10003260m.g Eutrema salsugineum HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
Sp2g09020 Schrenkiella parvula HOM05D005106 ORTHO05D006224 2.0e-27 125.6 86 66.3
DCAR_018109 Daucus carota HOM05D005106 ORTHO05D006224 1.3e-26 122.9 88 65.9
Solyc02g062620.3 Solanum lycopersicum HOM05D005106 ORTHO05D006224 1.3e-26 122.9 88 65.9
MCO12G258 Micromonas commoda HOM05D005106 ORTHO05D006224 3.8e-26 121.3 80 67.5
EL10As7g23802 Beta vulgaris HOM05D005106 ORTHO05D006224 3.2e-25 118.2 95 60.0
AUR62016818 Chenopodium quinoa HOM05D005106 ORTHO05D006224 3.2e-25 118.2 95 60.0
Nitab4.5_0000061g0200 Nicotiana tabacum HOM05D005106 ORTHO05D006224 7.2e-25 117.1 93 61.3
unitig_37.g13100 Utricularia gibba HOM05D005106 ORTHO05D006224 7.2e-25 117.1 97 59.8
Lj7A285G44 Lonicera japonica HOM05D005106 ORTHO05D006224 9.4e-25 116.7 74 70.3
Atru.chr6.2876 Acer truncatum HOM05D005106 ORTHO05D006224 1.2e-24 116.3 95 60.0
vmacro09002 Vaccinium macrocarpon HOM05D005106 ORTHO05D006224 1.2e-24 116.3 74 71.6
GSVIVG01020599001 Vitis vinifera HOM05D005106 ORTHO05D006224 1.2e-24 116.3 74 71.6
EL10Ac3g06463 Beta vulgaris HOM05D005106 ORTHO05D006224 1.6e-24 115.9 74 71.6
MD17G1234600 Malus domestica HOM05D005106 ORTHO05D006224 1.6e-24 115.9 89 62.9
Sopen02g013650 Solanum pennellii HOM05D005106 ORTHO05D006224 2.1e-24 115.5 74 70.3
Ah.11g045690 Amaranthus hybridus HOM05D005106 ORTHO05D006224 2.7e-24 115.2 74 70.3
ATR0665G640 Amborella trichopoda HOM05D005106 ORTHO05D006224 3.6e-24 114.8 74 70.3
BcaC06g31640 Brassica carinata HOM05D005106 ORTHO05D006224 3.6e-24 114.8 88 62.5
A06p47380 Brassica napus HOM05D005106 ORTHO05D006224 6.1e-24 114.0 96 57.3
BraA06t27608Z Brassica rapa HOM05D005106 ORTHO05D006224 6.1e-24 114.0 96 57.3
ClCG09G011570 Citrullus lanatus HOM05D005106 ORTHO05D006224 6.1e-24 114.0 74 68.9
HanXRQChr14g0454171 Helianthus annuus HOM05D005106 ORTHO05D006224 6.1e-24 114.0 74 68.9
Lalb_Chr14g0367111 Lupinus albus HOM05D005106 ORTHO05D006224 6.1e-24 114.0 74 70.3
PRCOL_00004370 Prasinoderma coloniale HOM05D005106 ORTHO05D006224 6.1e-24 114.0 86 62.8
Sabra17G0011800 Salix brachista HOM05D005106 ORTHO05D006224 6.1e-24 114.0 74 68.9
Cpa.g.sc83.87 Carica papaya HOM05D005106 ORTHO05D006224 8.0e-24 113.6 74 68.9
Lalb_Chr22g0356721 Lupinus albus HOM05D005106 ORTHO05D006224 8.0e-24 113.6 74 68.9
Aa31LG5G3040 Aethionema arabicum HOM05D005106 ORTHO05D006224 1.0e-23 113.2 74 68.9
arahy.Tifrunner.gnm1.ann1.RWFH5R Arachis hypogaea HOM05D005106 ORTHO05D006224 1.0e-23 113.2 74 68.9
arahy.Tifrunner.gnm1.ann1.UE89WV Arachis hypogaea HOM05D005106 ORTHO05D006224 1.0e-23 113.2 74 68.9
ClCG02G009520 Citrullus lanatus HOM05D005106 ORTHO05D006224 1.0e-23 113.2 107 52.3
FAN14G3298 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.0e-23 113.2 74 68.9
Ca_01483_v3 Cicer arietinum L. HOM05D005106 ORTHO05D006224 1.4e-23 112.8 74 68.9
Nitab4.5_0007033g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.4e-23 112.8 74 68.9
BcaC06g34582 Brassica carinata HOM05D005106 ORTHO05D006224 1.8e-23 112.5 92 59.8
BolC7t43217H Brassica oleracea HOM05D005106 ORTHO05D006224 1.8e-23 112.5 92 59.8
Cc10_g09490 Coffea canephora HOM05D005106 ORTHO05D006224 1.8e-23 112.5 73 69.9
C07p26890 Brassica napus HOM05D005106 ORTHO05D006224 2.3e-23 112.1 94 57.4
SMO339G0037 Selaginella moellendorffii HOM05D005106 ORTHO05D006224 3.0e-23 111.7 74 66.2
AUR62010418 Chenopodium quinoa HOM05D005106 ORTHO05D006224 5.2e-23 110.9 74 68.9
TPR.G6465 Trifolium pratense HOM05D005106 ORTHO05D006224 8.8e-23 110.2 74 67.6
Peaxi162Scf00688g00358 Petunia axillaris HOM05D005106 ORTHO05D006224 1.5e-22 109.4 86 62.8
MD09G1242300 Malus domestica HOM05D005106 ORTHO05D006224 2.6e-22 108.6 86 61.6
Sc04g0004790 Simmondsia chinensis HOM05D005106 ORTHO05D006224 3.4e-22 108.2 98 56.1
Lsat_1_v5_gn_4_146681 Lactuca sativa HOM05D005106 ORTHO05D006224 9.8e-22 106.7 74 64.9
HanXRQChr07g0195561 Helianthus annuus HOM05D005106 ORTHO05D006224 2.2e-21 105.5 90 56.7
Nitab4.5_0002677g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 2.2e-21 105.5 86 60.5
Actinidia06452 Actinidia chinensis HOM05D005106 ORTHO05D006224 4.1e-20 101.3 86 58.1
Hund09671 Selenicereus undatus HOM05D005106 ORTHO05D006224 3.5e-19 98.2 66 66.7
Dinv21367 Davidia involucrata HOM05D005106 ORTHO05D006224 4.5e-19 97.8 86 59.3
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 7.7e-19 97.1 81 60.5
Actinidia22276 Actinidia chinensis HOM05D005106 ORTHO05D006224 1.0e-18 96.7 86 57.0
FAN05G0301 Fragaria x ananassa HOM05D005106 ORTHO05D006224 1.0e-18 96.7 66 66.7
RcHm_v2.0_Chr2g0127331 Rosa chinensis HOM05D005106 ORTHO05D006224 1.0e-18 96.7 66 66.7
Lsat_1_v5_gn_2_108860 Lactuca sativa HOM05D005106 ORTHO05D006224 1.3e-18 96.3 88 54.5
AUR62010400 Chenopodium quinoa HOM05D005106 ORTHO05D006224 1.7e-18 95.9 66 66.7
HPP92_007900 Vanilla planifolia HOM05D005106 ORTHO05D006224 1.7e-18 95.9 63 69.8
SGA_v2.0_scaffold118G32565 Striga asiatica HOM05D005106 ORTHO05D006224 2.2e-18 95.5 91 52.7
COL.COLO4_18047 Corchorus olitorius HOM05D005106 ORTHO05D006224 1.9e-17 92.4 81 58.0
AUR62010422 Chenopodium quinoa HOM05D005106 ORTHO05D006224 3.2e-17 91.7 66 65.2
Nitab4.5_0000016g0640 Nicotiana tabacum HOM05D005106 ORTHO05D006224 3.6e-16 88.2 64 60.9
SalBow7G4324 Salvia bowleyana HOM05D005106 ORTHO05D006224 3.6e-16 88.2 61 68.9
Nitab4.5_0008100g0020 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.4e-15 86.3 63 61.9
EL10Ac5g12160 Beta vulgaris HOM05D005106 ORTHO05D006224 3.0e-15 85.1 59 66.1
MBI07_g29116_MAGBIO Magnolia biondii HOM05D005106 ORTHO05D006224 3.0e-15 85.1 57 70.2
EL10Ac7g17400 Beta vulgaris HOM05D005106 ORTHO05D006224 7.5e-14 80.5 74 54.1
FAN02G3272 Fragaria x ananassa HOM05D005106 ORTHO05D006224 2.7e-11 72.0 64 54.7
SHI10494 Sapria himalayana HOM05D005106 ORTHO05D006224 4.5e-11 71.2 59 52.5
Gohir.A11G293700 Gossypium hirsutum HOM05D005106 ORTHO05D006224 1.5e-09 66.2 49 61.2
Nitab4.5_0005272g0060 Nicotiana tabacum HOM05D005106 ORTHO05D006224 1.2e-06 56.6 78 43.6


User provided reference genes

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